Helicobacter pylori Hpfe115 |
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Putative Helicobacter pylori Hpfe115 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,618,823 bp
GenBank #: CP094063
REBASE acronym: Hpyfe115
Org_num: 57353
All begin MPG68_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3005 | type I restriction endonuclease | |||
| 3010 | M | M.Hpy66ORF4960P (97% identity) | M.Hpyfe115ORF3010P | |
| 3015 | S | S.Hpyfe2ORF4775P (41% identity) | S.Hpyfe115ORF3010P | |
| 3020 | R | HpyML1ORFXP (97% identity) | Hpyfe115ORF3010P | |
| 3025 | hydroxyethylthiazole kinase | |||
| 3315 | cadmium-translocating P-type ATPase | |||
| 3320 | S | S.HpySP405XV (95% identity) | RTAYNNNNNNTTG | S.Hpyfe115ORF3320P |
| 3325 | outer membrane beta-barrel protein HofF | |||
| 4940 | type I restriction endonuclease | |||
| 4945 | R | HpyK115ORF2245P (68% identity) | CAGNNNNNTC | Hpyfe115ORF4950P |
| 4950 | M | M.HpyK022IX (97% identity) | CAGNNNNNTC | M.Hpyfe115ORF4950P |
| 4955 | S | S.Hpyfe104ORF3000P (98% identity) | CAGNNNNNTC | S.Hpyfe115ORF4950P |
| 4965 | RNA degradosome polyphosphate kinase | |||
| 7800 | M48 family metallopeptidase | |||
| 7805 | R | Hpyfe74ORF7605P (97% identity) | CRTANNNNNNNTAG | Hpyfe115ORF7810P |
| 7810 | M | M.HpyTW18IX (98% identity) | CRTANNNNNNNTAG | M.Hpyfe115ORF7810P |
| 7815 | CAAX protease | |||
| 7820 | S | S.Hpy117ORF7375P (97% identity) | CRTANNNNNNNTAG | S.Hpyfe115ORF7810P |
| 7825 | 62 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyJA105ORF1345P (93% identity) | Hpyfe115ORF55P | |
| 60 | transcription termination factor NusA | |||
| 1395 | serine O-acetyltransferase | |||
| 1400 | R | HpyTW22IP (94% identity) | CATG | Hpyfe115ORF1405P |
| 1405 | M | M.HpyF211ORF1162P (98% identity) | CATG | M.Hpyfe115ORF1405P |
| 1410 | HAD family hydrolase | |||
| 1855 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1860 | M | M.HpyU011XV (99% identity) | GCGC | M.Hpyfe115ORF1860P |
| 1865 | 144 aa hypothetical protein | |||
| 2035 | Laminin subunit alpha-2 precursor | |||
| 2040 | R | Hpy55ORF1100P (96% identity) | TCNNGA | Hpyfe115ORF2045P |
| 2045 | M | M.HpyOK302ORFYP (98% identity) | TCNNGA | M.Hpyfe115ORF2045P |
| 2050 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2720 | ATP-dependent helicase | |||
| 2725 | M | M.HpyCA2IX (99% identity) | GTNNAC | M.Hpyfe115ORF2725P |
| 2730 | R | HpyFD719ORF7505P (95% identity) | GTNNAC | Hpyfe115ORF2725P |
| 2735 | flagellar hook protein FlgE | |||
| 3845 | (Fe-S)-binding protein | |||
| 3850 | RM | Hpy55ORF681P (88% identity) | Hpyfe115ORF3850P | |
| 3855 | outer membrane protein | |||
| 3935 | 3-5 exonuclease | |||
| 3940 | M | M.Hpyfe68ORF3850P (99% identity) | CCNNGG | M.Hpyfe115ORF3940P |
| 3945 | R | Hpyfe65ORF3785P (99% identity) | CCNNGG | Hpyfe115ORF3940P |
| 3950 | 3-5 exonuclease | |||
| 4725 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4730 | R | HpyK021VIP (96% identity) | GTAC | Hpyfe115ORF4735P |
| 4735 | M | M.HpyJA112XI (96% identity) | GTAC | M.Hpyfe115ORF4735P |
| 4740 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4830 | catalase | |||
| 4835 | R | HpySG13ORF2310P (98% identity) | ACGT | Hpyfe115ORF4840P |
| 4840 | M | M.HpyK101ORF2295P (98% identity) | ACGT | M.Hpyfe115ORF4840P |
| 4845 | GIY-YIG nuclease family protein | |||
| 4840 | DNA cytosine methyltransferase | |||
| 4845 | R | Hpyfe61ORF5010P (99% identity) | ACNGT | Hpyfe115ORF4850P |
| 4850 | M | M.Hpyfe36ORF4810P (97% identity) | ACNGT | M.Hpyfe115ORF4850P |
| 4855 | translational GTPase TypA | |||
| 4860 | lipopolysaccharide heptosyltransferase family | |||
| 4865 | M | M.HpyT029II (98% identity) | ATTAAT | M.Hpyfe115ORF4865P |
| 4870 | Hop family outer membrane protein HopJ/HopK | |||
| 5585 | 119 aa hypothetical protein | |||
| 5590 | M | M.HpyH1V (99% identity) | CTNAG | M.Hpyfe115ORF5590P |
| 5595 | R | HpyNP04VIIP (99% identity) | CTNAG | Hpyfe115ORF5590P |
| 5600 | polysaccharide deacetylase | |||
| 5830 | AAA family ATPase | |||
| 5835 | M | M.Hpyfe3ORF5780P (98% identity) | CCGG | M.Hpyfe115ORF5835P |
| 5840 | R | HpyTW19IIP (96% identity) | CCGG | Hpyfe115ORF5835P |
| 5845 | 204 aa hypothetical protein | |||
| 5845 | 204 aa hypothetical protein | |||
| 5850 | M | M.Hpyfe35ORF5885P (100% identity) | TCGA | M.Hpyfe115ORF5850P |
| 5855 | exodeoxyribonuclease VII large subunit | |||
| 6525 | ACP S-malonyltransferase | |||
| 6535 | R | HpyTW16XP (95% identity) | GATC | Hpyfe115ORF6540P |
| 6540 | M | M.HpyK112VIII (97% identity) | GATC | M.Hpyfe115ORF6540P |
| 6545 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 7100 | sodium/proline symporter PutP | |||
| 7105 | M | M2.HpyK006VP (98% identity) | M1.Hpyfe115ORF7105P | |
| 7110 | M | M2.Hpyfe78ORF6990P (99% identity) | CCTC | M2.Hpyfe115ORF7105P |
| 7115 | agmatine deiminase | |||
| 7160 | DNA methyltransferase | |||
| 7165 | R | Hpyfe39ORF7100P (98% identity) | GANTC | Hpyfe115ORF7170P |
| 7170 | M | M.Hpyfe40ORF6905P (99% identity) | GANTC | M.Hpyfe115ORF7170P |
| 7175 | N-6 DNA methylase | |||
| 7170 | site-specific DNA-methyltransferase | |||
| 7175 | RM | HpyHK721ORFDP (89% identity) | Hpyfe115ORF7175P | |
| 7180 | carboxylating nicotinate-nucleotide | |||
| 7695 | 133 aa hypothetical protein | |||
| 7700 | R | Hpyfe99ORF7775P (99% identity) | TGCA | Hpyfe115ORF7705P |
| 7705 | M | M.HpyTW16IV (98% identity) | TGCA | M.Hpyfe115ORF7705P |
| 7710 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyTW19ORF7115P (98% identity) | M.Hpyfe115ORF40P | |
| 50 | R | Hpyfe13ORF40P (96% identity) | Hpyfe115ORF40P | |
| 55 | Eco57I restriction-modification methylase | |||
| 620 | biotin synthase | |||
| 625 | R | Hpyfe92ORF650P (95% identity) | Hpyfe115ORF630P | |
| 630 | M | M.HpyOK302ORFCP (98% identity) | M.Hpyfe115ORF630P | |
| 635 | DNA/RNA non-specific endonuclease | |||
| 7230 | copper response regulator transcription factor | |||
| 7235 | M | M.HpyUM065ORF2245P (97% identity) | M.Hpyfe115ORF7235P | |
| 7240 | R | HpyK035ORF195P (96% identity) | Hpyfe115ORF7235P | |
| 7245 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4105 | NAD(P)H-dependent oxidoreductase | |||
| 4110 | R | Hpyfe106GmrSD2P (95% identity) | Hpyfe115GmrSD2P | |
| 4115 | sel1 repeat family protein | |||
| 4685 | 50S ribosomal protein L9 | |||
| 4690 | R | Hpyfe81GmrSD2P (69% identity) | Hpyfe115GmrSDP | |
| 4695 | type I glutamate--ammonia ligase | |||