Helicobacter pylori Hpfe118 |
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Putative Helicobacter pylori Hpfe118 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,637,345 bp
GenBank #: CP094062
REBASE acronym: Hpyfe118
Org_num: 57354
All begin MPG12_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3500 | cadmium-translocating P-type ATPase | |||
| 3505 | S | S.HpyK112ORF3930P (95% identity) | S.Hpyfe118ORF3505P | |
| 3510 | outer membrane beta-barrel protein HofF | |||
| 5085 | type I restriction endonuclease | |||
| 5090 | R | Hpy3ORF5480BP (97% identity) | Hpyfe118ORF5095P | |
| 5095 | M | M.Hpyfe114ORF4890P (98% identity) | M.Hpyfe118ORF5095P | |
| 5100 | S | S.Hpy5056ORF8615P (98% identity) | S.Hpyfe118ORF5095P | |
| 5110 | RNA degradosome polyphosphate kinase | |||
| 7790 | M48 family metallopeptidase | |||
| 7795 | R | Hpyfe74ORF7605P (96% identity) | Hpyfe118ORF7800P | |
| 7800 | M | M.HpyOK303ORFHP (97% identity) | M.Hpyfe118ORF7800P | |
| 7805 | S | S.HpyF232ORFGP (45% identity) | S.Hpyfe118ORF7800P | |
| 7810 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyQ59ORFVP (91% identity) | Hpyfe118ORF55P | |
| 60 | transcription termination factor NusA | |||
| 260 | ComF family protein | |||
| 265 | RM | HpyBS07ORF4765P (98% identity) | CYANNNNNNTTC | Hpyfe118ORF265P |
| 270 | S | S.HpyGM7ORF7180P (58% identity) | S.Hpyfe118ORF265P | |
| 275 | DNA polymerase I | |||
| 1585 | serine O-acetyltransferase | |||
| 1590 | R | HpyUM038ORF6365P (86% identity) | CATG | Hpyfe118ORF1595P |
| 1595 | M | M.HpyK25I (98% identity) | CATG | M.Hpyfe118ORF1595P |
| 1600 | HAD family hydrolase | |||
| 2050 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 2055 | M | M.HpyNP07XV (98% identity) | GCGC | M.Hpyfe118ORF2055P |
| 2060 | 144 aa hypothetical protein | |||
| 2230 | Laminin subunit alpha-2 precursor | |||
| 2235 | R | Hpyfe59ORF2060P (100% identity) | TCNNGA | Hpyfe118ORF2240P |
| 2240 | M | M.Hpyfe82ORF2040P (100% identity) | TCNNGA | M.Hpyfe118ORF2240P |
| 2245 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2915 | ATP-dependent helicase | |||
| 2920 | M | M.HpyCHN2XII (99% identity) | GTNNAC | M.Hpyfe118ORF2920P |
| 2925 | R | Hpyfe114ORF2725P (96% identity) | GTNNAC | Hpyfe118ORF2920P |
| 2930 | flagellar hook protein FlgE | |||
| 3195 | phosphatase PAP2 family protein | |||
| 3200 | R | HpyOK304ORFWP (97% identity) | GGCC | Hpyfe118ORF3205P |
| 3205 | M | M.HpysHP34ORF6260P (100% identity) | GGCC | M.Hpyfe118ORF3205P |
| 3210 | type I restriction-modification system subunit | |||
| 4015 | (Fe-S)-binding protein | |||
| 4020 | RM | Hpyfe95ORF3735P (86% identity) | Hpyfe118ORF4020P | |
| 4025 | outer membrane protein | |||
| 4880 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4885 | R | HpyK022VIP (94% identity) | GTAC | Hpyfe118ORF4890P |
| 4890 | M | M.Hpyfe112ORF4810P (98% identity) | GTAC | M.Hpyfe118ORF4890P |
| 4895 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4975 | catalase | |||
| 4980 | R | HpySG13ORF2310P (99% identity) | ACGT | Hpyfe118ORF4985P |
| 4985 | M | M.HpyMA23ORF4150P (98% identity) | ACGT | M.Hpyfe118ORF4985P |
| 4990 | GIY-YIG nuclease family protein | |||
| 4985 | DNA cytosine methyltransferase | |||
| 4990 | R | HpyFD577ORFOP (99% identity) | ACNGT | Hpyfe118ORF4995P |
| 4995 | M | M.Hpyfe78ORF2200P (99% identity) | ACNGT | M.Hpyfe118ORF4995P |
| 5000 | translational GTPase TypA | |||
| 5005 | lipopolysaccharide heptosyltransferase family | |||
| 5010 | M | M.Hpyfe95ORF2810P (97% identity) | ATTAAT | M.Hpyfe118ORF5010P |
| 5015 | Hop family outer membrane protein HopJ/HopK | |||
| 5525 | group I intron-associated PD-(D/E)XK | |||
| 5530 | M | M.Hpys8ORF5410P (100% identity) | GCNGC | M.Hpyfe118ORF5530P |
| 5535 | translation elongation factor 4 | |||
| 5730 | 119 aa hypothetical protein | |||
| 5735 | M | M.HpySG07VII (98% identity) | CTNAG | M.Hpyfe118ORF5735P |
| 5740 | R | HpyK023VP (98% identity) | CTNAG | Hpyfe118ORF5735P |
| 5745 | polysaccharide deacetylase | |||
| 5975 | AAA family ATPase | |||
| 5980 | M | M.Hpyfe125ORF1750P (99% identity) | CCGG | M.Hpyfe118ORF5980P |
| 5985 | R | HpyF004IIIP (96% identity) | CCGG | Hpyfe118ORF5980P |
| 5990 | exodeoxyribonuclease VII large subunit | |||
| 6405 | pseudaminic acid synthase | |||
| 6410 | R | R2.HpyK115ORF920P (96% identity) | R2.Hpyfe118ORF6420P | |
| 6415 | R | R1.HpyJ009ORF1120P (99% identity) | R1.Hpyfe118ORF6420P | |
| ??? | M | M2.HpySG38ORF6280P (97% identity) | M2.Hpyfe118ORF6420P | |
| 6425 | M | M1.HpyTW10ORF970P (98% identity) | M1.Hpyfe118ORF6420P | |
| 6430 | IS1595 family transposase | |||
| 6690 | ACP S-malonyltransferase | |||
| 6700 | R | HpyTW02IXP (96% identity) | GATC | Hpyfe118ORF6705P |
| 6705 | M | M.Hpyfe76ORF6575P (98% identity) | GATC | M.Hpyfe118ORF6705P |
| 6710 | alpha-1,2-fucosyltransferase | |||
| 7085 | sodium/proline symporter PutP | |||
| 7090 | M | M1.Hpyfe12ORF7025P (82% identity) | M1.Hpyfe118ORF7090P | |
| 7095 | M | M1.Hpy24ORF60P (96% identity) | CCTC | M2.Hpyfe118ORF7090P |
| 7100 | agmatine deiminase | |||
| 7145 | DNA methyltransferase | |||
| 7150 | R | Hpyfe38ORF6935P (51% identity) | Hpyfe118ORF7165P | |
| 7155 | 245 aa hypothetical protein | |||
| 7160 | 56 aa hypothetical protein | |||
| 7165 | M | M.Hpyfe95ORF6900P (40% identity) | M.Hpyfe118ORF7165P | |
| 7170 | 399 aa hypothetical protein | |||
| 7230 | copper response regulator transcription factor | |||
| 7235 | R | Hpy1681ORFFP (98% identity) | GAAGA | Hpyfe118ORF7240P |
| 7240 | M | M1.HpySH010VI (99% identity) | GAAGA | M1.Hpyfe118ORF7240P |
| 7245 | M | M1.HpyTW04V (100% identity) | GAAGA | M2.Hpyfe118ORF7240P |
| 7250 | site-specific DNA-methyltransferase | |||
| 7700 | 175 aa hypothetical protein | |||
| 7705 | R | Hpy52ORF1456P (99% identity) | TGCA | Hpyfe118ORF7710P |
| 7710 | M | M.HpyMA05V (99% identity) | TGCA | M.Hpyfe118ORF7710P |
| 7715 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe51ORF40P (97% identity) | M.Hpyfe118ORF40P | |
| 50 | R | HpyOK212ORFEP (98% identity) | Hpyfe118ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 800 | biotin synthase | |||
| 805 | R | Hpyfe85ORF630P (94% identity) | Hpyfe118ORF810P | |
| 810 | M | M.HpyLIM9ORF6675P (91% identity) | M.Hpyfe118ORF810P | |
| 815 | DNA/RNA non-specific endonuclease | |||
| 7245 | site-specific DNA-methyltransferase | |||
| ??? | M | M.HpyJA107ORF195P (95% identity) | M.Hpyfe118ORF7250P | |
| 7255 | R | HpyK049ORF205P (96% identity) | Hpyfe118ORF7250P | |
| 7260 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4260 | NAD(P)H-dependent oxidoreductase | |||
| 4265 | R | HpyK046GmrSD2P (94% identity) | Hpyfe118GmrSD2P | |
| 4270 | sel1 repeat family protein | |||
| 4840 | 50S ribosomal protein L9 | |||
| 4845 | R | Hpyfe52GmrSDP (90% identity) | Hpyfe118GmrSDP | |
| 4850 | type I glutamate--ammonia ligase | |||