Helicobacter pylori Hpfe120 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori Hpfe120 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,609,748 bp
GenBank #: CP094061
REBASE acronym: Hpyfe120
Org_num: 57355
All begin MPG58_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4415 | outer membrane beta-barrel protein HofF | |||
| 4420 | S | S.HpyT028XV (93% identity) | S.Hpyfe120ORF4420P | |
| 4425 | cadmium-translocating P-type ATPase | |||
| 4980 | type I restriction endonuclease | |||
| 4985 | R | Hpyfe40ORF4890P (95% identity) | GACNNNNNTAY | Hpyfe120ORF4990P |
| 4990 | M | M.Hpyfe99ORF5195P (99% identity) | GACNNNNNTAY | M.Hpyfe120ORF4990P |
| 4995 | S | S.HpyCHN8ORF2215P (100% identity) | GACNNNNNTAY | S.Hpyfe120ORF4990P |
| 5005 | RNA degradosome polyphosphate kinase | |||
| 7660 | M48 family metallopeptidase | |||
| 7665 | R | Hpyfe23ORF7685P (97% identity) | Hpyfe120ORF7670P | |
| 7670 | M | M.Hpyfe61ORF7705P (98% identity) | M.Hpyfe120ORF7670P | |
| 7675 | S | S.Hpyfe17ORF7520P (46% identity) | S.Hpyfe120ORF7670P | |
| 7680 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 713 aa hypothetical protein | |||
| 55 | RM | HpyC021ORF7480P (67% identity) | Hpyfe120ORF55P | |
| 60 | transcription termination factor NusA | |||
| 125 | outer membrane protein | |||
| 130 | R | Hpyfe57ORF140P (98% identity) | CCATC | Hpyfe120ORF135P |
| 135 | M | M2.HpysHP34ORF1580P (99% identity) | CCATC | M1.Hpyfe120ORF135P |
| 140 | M | M2.Hpyfe88ORF155P (99% identity) | CCATC | M2.Hpyfe120ORF135P |
| 145 | LptF/LptG family permease | |||
| 270 | ComF family protein | |||
| 275 | RM | Hpyfe72ORF280P (98% identity) | CYANNNNNNTTC | Hpyfe120ORF275P |
| 280 | S | S.HpyK024ORF7015AP (99% identity) | S1.Hpyfe120ORF275P | |
| 285 | S | S.HpyOki128ORF6635P (42% identity) | S2.Hpyfe120ORF275P | |
| 290 | DNA polymerase I | |||
| 1395 | serine O-acetyltransferase | |||
| 1400 | R | HpySG19IP (93% identity) | CATG | Hpyfe120ORF1405P |
| 1405 | M | M.HpyK045I (98% identity) | CATG | M.Hpyfe120ORF1405P |
| 1410 | HAD family hydrolase | |||
| 1840 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1845 | M | M.HpyT029X (98% identity) | GCGC | M.Hpyfe120ORF1845P |
| 1850 | 144 aa hypothetical protein | |||
| 2020 | Laminin subunit alpha-2 precursor | |||
| 2025 | R | Hpyfe93ORF2050P (100% identity) | TCNNGA | Hpyfe120ORF2030P |
| 2030 | M | M.HpySG09XI (100% identity) | TCNNGA | M.Hpyfe120ORF2030P |
| 2035 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2670 | ATP-dependent helicase | |||
| 2675 | M | M.Hpyfe60ORF2770P (97% identity) | GTNNAC | M.Hpyfe120ORF2675P |
| 2680 | R | HpyK115ORF4415P (97% identity) | GTNNAC | Hpyfe120ORF2675P |
| 2685 | flagellar hook protein FlgE | |||
| 2880 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2885 | M | M.Hpyfe12ORF4660P (99% identity) | GTAC | M.Hpyfe120ORF2885P |
| 2890 | R | Hpyfe29ORF4745P (98% identity) | GTAC | Hpyfe120ORF2885P |
| 2895 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3845 | (Fe-S)-binding protein | |||
| 3850 | RM | HpyGU71CORFOP (76% identity) | Hpyfe120ORF3850P | |
| 3855 | outer membrane protein | |||
| 3925 | 3-5 exonuclease | |||
| 3930 | M | M.Hpyfe99ORF3980P (100% identity) | CCNNGG | M.Hpyfe120ORF3930P |
| 3935 | R | Hpyfe99ORF3980P (100% identity) | CCNNGG | Hpyfe120ORF3930P |
| 3940 | 3-5 exonuclease | |||
| 4870 | catalase | |||
| 4875 | R | Hpyfe110ORF5235P (98% identity) | ACGT | Hpyfe120ORF4880P |
| 4880 | M | M.Hpyfe4ORF4745P (98% identity) | ACGT | M.Hpyfe120ORF4880P |
| 4885 | GIY-YIG nuclease family protein | |||
| 4880 | DNA cytosine methyltransferase | |||
| 4885 | R | HpyQ59ORFXP (100% identity) | ACNGT | Hpyfe120ORF4890P |
| 4890 | M | M.HpySG12II (99% identity) | ACNGT | M.Hpyfe120ORF4890P |
| 4895 | translational GTPase TypA | |||
| 4900 | lipopolysaccharide heptosyltransferase family | |||
| 4905 | M | M.Hpyfe70ORF4910P (97% identity) | ATTAAT | M.Hpyfe120ORF4905P |
| 4910 | Hop family outer membrane protein HopJ/HopK | |||
| 5840 | AAA family ATPase | |||
| 5845 | M | M.HpyAR8IV (100% identity) | CCGG | M.Hpyfe120ORF5845P |
| 5850 | R | Hpy4ORF1335P (98% identity) | CCGG | Hpyfe120ORF5845P |
| 5855 | 204 aa hypothetical protein | |||
| 5855 | 204 aa hypothetical protein | |||
| 5860 | M | M.Hpyfe85ORF5795P (100% identity) | TCGA | M.Hpyfe120ORF5860P |
| 5865 | exodeoxyribonuclease VII large subunit | |||
| 6725 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6730 | M | M.Hpyfe75ORF6725P (98% identity) | GATC | M.Hpyfe120ORF6730P |
| 6735 | R | HpyTW16XP (97% identity) | GATC | Hpyfe120ORF6730P |
| 6745 | ACP S-malonyltransferase | |||
| 6950 | DNA cytosine methyltransferase | |||
| 6955 | R | Hpyfe49ORF6980P (95% identity) | CCTC | Hpyfe120ORF6960P |
| 6960 | M | M1.Hpyfe54ORF6825P (99% identity) | CCTC | M1.Hpyfe120ORF6960P |
| 6965 | M | M2.Hpyfe103ORF6940P (98% identity) | CCTC | M2.Hpyfe120ORF6960P |
| 6970 | TerC family protein | |||
| 7010 | DNA methyltransferase | |||
| 7015 | R | HpyBS07ORF5730P (96% identity) | GANTC | Hpyfe120ORF7020P |
| 7020 | M | M.HpyUM032IV (98% identity) | GANTC | M.Hpyfe120ORF7020P |
| 7025 | N-6 DNA methylase | |||
| 7020 | site-specific DNA-methyltransferase | |||
| 7025 | RM | Hpyfe62ORF6845P (83% identity) | Hpyfe120ORF7025P | |
| 7030 | carboxylating nicotinate-nucleotide | |||
| 7080 | copper response regulator transcription factor | |||
| 7085 | R | HpyF20JORF35P (98% identity) | GAAGA | Hpyfe120ORF7090P |
| 7090 | M | M1.Hpyfe110ORF7470P (96% identity) | GAAGA | M1.Hpyfe120ORF7090P |
| 7095 | M | M2.HpyMA17V (99% identity) | GAAGA | M2.Hpyfe120ORF7090P |
| 7100 | site-specific DNA-methyltransferase | |||
| 7555 | 175 aa hypothetical protein | |||
| 7560 | R | HpyK118XIP (98% identity) | TGCA | Hpyfe120ORF7565P |
| 7565 | M | M.HpyH1XV (99% identity) | TGCA | M.Hpyfe120ORF7565P |
| 7570 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyF226ORFEP (98% identity) | GWCAY | M.Hpyfe120ORF40P |
| 45 | R | Hpyfe85ORF40P (97% identity) | GWCAY | Hpyfe120ORF40P |
| 50 | 713 aa hypothetical protein | |||
| 620 | biotin synthase | |||
| 625 | R | Hpyfe92ORF650P (95% identity) | Hpyfe120ORF630P | |
| 630 | M | M.HpyFD506ORFB1P (96% identity) | M.Hpyfe120ORF630P | |
| 635 | DNA/RNA non-specific endonuclease | |||
| 7095 | site-specific DNA-methyltransferase | |||
| 7100 | M | M.HpySG33XV (98% identity) | M.Hpyfe120ORF7100P | |
| 7105 | R | HpyTW08ORF195P (96% identity) | Hpyfe120ORF7100P | |
| 7110 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2925 | type I glutamate--ammonia ligase | |||
| 2930 | R | Hpyfe63GmrSD2P (87% identity) | Hpyfe120GmrSD2P | |
| 2935 | 50S ribosomal protein L9 | |||
| 3660 | sel1 repeat family protein | |||
| 3665 | R | HpyCHN8GmrSD2P (96% identity) | Hpyfe120GmrSDP | |
| 3670 | NAD(P)H-dependent oxidoreductase | |||