Helicobacter pylori Hpfe122 |
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Putative Helicobacter pylori Hpfe122 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,559,659 bp
GenBank #: CP094059
REBASE acronym: Hpyfe122
Org_num: 57356
All begin MPG39_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4290 | outer membrane beta-barrel protein HofF | |||
| 4295 | S | S.HpyBG7X (97% identity) | GAANNNNNNNTTC | S.Hpyfe122ORF4295P |
| 4300 | cadmium-translocating P-type ATPase | |||
| 4595 | hydroxyethylthiazole kinase | |||
| 4600 | R | Hpyfe59ORF4665P (97% identity) | CCANNNNNNNTTG | Hpyfe122ORF4610P |
| 4605 | S | S.HpyC208XIII (96% identity) | CCANNNNNNNTTG | S.Hpyfe122ORF4610P |
| 4610 | M | M.Hpyfe118ORF3210P (96% identity) | CCANNNNNNNTTG | M.Hpyfe122ORF4610P |
| 4615 | DNA cytosine methyltransferase | |||
| 4875 | motility associated factor glycosyltransferase | |||
| 4880 | R | HpyOK06ORFOP (95% identity) | CTANNNNNNTC | Hpyfe122ORF4885P |
| 4885 | M | M.HpyTW06X (97% identity) | CTANNNNNNTC | M.Hpyfe122ORF4885P |
| 4890 | S | S.Hpyfe123ORF5125P (98% identity) | CTANNNNNNTC | S.Hpyfe122ORF4885P |
| 4900 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyCHN9ORF7150P (88% identity) | Hpyfe122ORF55P | |
| 60 | transcription termination factor NusA | |||
| 265 | ComF family protein | |||
| 270 | RM | Hpyfe24ORF270P (98% identity) | CYANNNNNNTTC | Hpyfe122ORF270P |
| 275 | S | S1.HpyOK313ORFFP (96% identity) | S1.Hpyfe122ORF270P | |
| 280 | S | S2.Hpyfe85ORF275P (97% identity) | S2.Hpyfe122ORF270P | |
| 285 | DNA polymerase I | |||
| 1395 | serine O-acetyltransferase | |||
| 1400 | R | Hpyfe11ORF6415P (93% identity) | CATG | Hpyfe122ORF1405P |
| 1405 | M | M.Hpyfe84ORF6530P (100% identity) | CATG | M.Hpyfe122ORF1405P |
| 1410 | HAD family hydrolase | |||
| 1575 | purine-nucleoside phosphorylase | |||
| 1580 | R | HpyCHN1IXP (99% identity) | TCNGA | Hpyfe122ORF1585P |
| 1585 | M | M.HpySG36VIII (99% identity) | TCNGA | M.Hpyfe122ORF1585P |
| 1590 | Hop family adhesin HopQ | |||
| 1865 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1870 | M | M.HpyJSHR6ORF3630P (99% identity) | GCGC | M.Hpyfe122ORF1870P |
| 1875 | 144 aa hypothetical protein | |||
| 2050 | Laminin subunit alpha-2 precursor | |||
| 2055 | R | HpyK034VP (98% identity) | TCNNGA | Hpyfe122ORF2060P |
| 2060 | M | M.Hpyfe88ORF2055P (100% identity) | TCNNGA | M.Hpyfe122ORF2060P |
| 2065 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2710 | ATP-dependent helicase | |||
| 2715 | M | M.Hpyfe19ORF2720P (98% identity) | GTNNAC | M.Hpyfe122ORF2715P |
| 2720 | R | HpyDU15ORF1930P (98% identity) | GTNNAC | Hpyfe122ORF2715P |
| 2725 | flagellar hook protein FlgE | |||
| 2910 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2915 | M | M.HpySG14VIII (100% identity) | GTAC | M.Hpyfe122ORF2915P |
| 2920 | R | HpyGU62AORFRP (98% identity) | GTAC | Hpyfe122ORF2915P |
| 2925 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3690 | 3-5 exonuclease | |||
| 3695 | R | Hpyfe68ORF3850P (99% identity) | CCNNGG | Hpyfe122ORF3700P |
| 3700 | M | M.Hpyfe55ORF3835P (100% identity) | CCNNGG | M.Hpyfe122ORF3700P |
| 3705 | 3-5 exonuclease | |||
| 3775 | outer membrane protein | |||
| 3780 | RM | HpyMA06ORF2930P (93% identity) | Hpyfe122ORF3780P | |
| 3785 | (Fe-S)-binding protein | |||
| 4610 | type I restriction-modification system subunit | |||
| 4615 | M | M.HpysHP34ORF6260P (100% identity) | GGCC | M.Hpyfe122ORF4615P |
| 4620 | R | HpyK042ORF2510P (98% identity) | GGCC | Hpyfe122ORF4615P |
| 4625 | phosphatase PAP2 family protein | |||
| 4770 | catalase | |||
| 4775 | R | HpyMA12ORF4400P (92% identity) | ACGT | Hpyfe122ORF4780P |
| 4780 | M | M.HpySG04ORF2435P (98% identity) | ACGT | M.Hpyfe122ORF4780P |
| 4785 | GIY-YIG nuclease family protein | |||
| 4780 | DNA cytosine methyltransferase | |||
| 4785 | R | HpySG12IIP (98% identity) | ACNGT | Hpyfe122ORF4790P |
| 4790 | M | M.HpyTW17V (99% identity) | ACNGT | M.Hpyfe122ORF4790P |
| 4795 | translational GTPase TypA | |||
| 4800 | lipopolysaccharide heptosyltransferase family | |||
| 4805 | M | M.Hpyfe10ORF4950P (98% identity) | ATTAAT | M.Hpyfe122ORF4805P |
| 4810 | Hop family outer membrane protein HopJ/HopK | |||
| 5755 | AAA family ATPase | |||
| 5760 | M | M.Hpyfe59ORF5820P (100% identity) | CCGG | M.Hpyfe122ORF5760P |
| 5765 | R | HpyH1IIIP (95% identity) | CCGG | Hpyfe122ORF5760P |
| 5770 | 204 aa hypothetical protein | |||
| 5770 | 204 aa hypothetical protein | |||
| 5775 | M | M.Hpyfe77ORF1855P (100% identity) | TCGA | M.Hpyfe122ORF5775P |
| 5780 | exodeoxyribonuclease VII large subunit | |||
| 6185 | pseudaminic acid synthase | |||
| 6190 | R | R2.Hpyfe64ORF1930P (98% identity) | R1.Hpyfe122ORF6200P | |
| 6195 | R | R2.Hpyfe63ORF6195P (97% identity) | R2.Hpyfe122ORF6200P | |
| ??? | M | M2.HpyTW01ORF900P (97% identity) | M1.Hpyfe122ORF6200P | |
| ??? | M | M.HpyUM111ORF890P (97% identity) | M2.Hpyfe122ORF6200P | |
| 6215 | IS1595 family transposase | |||
| 6610 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6615 | M | M.Hpyfe103ORF6765P (98% identity) | GATC | M.Hpyfe122ORF6615P |
| 6620 | R | HpyML2ORFIP (94% identity) | GATC | Hpyfe122ORF6615P |
| 6630 | ACP S-malonyltransferase | |||
| 6775 | sodium/proline symporter PutP | |||
| 6780 | M | M2.Hpyfe16ORF1195P (97% identity) | M1.Hpyfe122ORF6780P | |
| 6785 | M | M1.HpyK016IV (97% identity) | CCTC | M2.Hpyfe122ORF6780P |
| 6790 | TerC family protein | |||
| 6830 | DNA methyltransferase | |||
| 6835 | R | HpySG36VIP (98% identity) | GANTC | Hpyfe122ORF6840P |
| 6840 | M | M.Hpyfe89ORF7150P (99% identity) | GANTC | M.Hpyfe122ORF6840P |
| 6845 | DNA methyltransferase | |||
| 6840 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyJA108ORF255P (92% identity) | Hpyfe122ORF6845P | |
| 6865 | carboxylating nicotinate-nucleotide | |||
| 7375 | DUF5343 domain-containing protein | |||
| 7380 | M | M.HpyOK06ORFFP (98% identity) | M.Hpyfe122ORF7380P | |
| 7385 | type II restriction endonuclease | |||
| 7380 | DNA cytosine methyltransferase | |||
| 7385 | R | Hpyfe99ORF7775P (97% identity) | TGCA | Hpyfe122ORF7390P |
| 7390 | M | M.HpyUM038ORF1005P (100% identity) | TGCA | M.Hpyfe122ORF7390P |
| 7395 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyTW04ORF7140P (97% identity) | M.Hpyfe122ORF40P | |
| 50 | R | HpyTW04ORF7140P (97% identity) | Hpyfe122ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 620 | biotin synthase | |||
| 625 | R | Hpyfe74ORF640P (96% identity) | Hpyfe122ORF630P | |
| 630 | M | M.HpyTW09ORF6515P (97% identity) | M.Hpyfe122ORF630P | |
| 635 | DNA/RNA non-specific endonuclease | |||
| 4440 | 145 aa hypothetical protein | |||
| 4445 | R | HpyMA21ORF205P (95% identity) | Hpyfe122ORF4450P | |
| 4450 | M | M.HpyP33ORFLP (98% identity) | M.Hpyfe122ORF4450P | |
| 4455 | ABC transporter permease/substrate-binding | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2955 | type I glutamate--ammonia ligase | |||
| 2960 | R | HpySG26GmrSDP (91% identity) | Hpyfe122GmrSDP | |
| 2965 | 50S ribosomal protein L9 | |||
| 3530 | sel1 repeat family protein | |||
| 3535 | R | HpyTW18GmrSD2P (96% identity) | Hpyfe122GmrSD2P | |
| 3540 | NAD(P)H-dependent oxidoreductase | |||