Helicobacter pylori Hpfe123 |
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Putative Helicobacter pylori Hpfe123 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,615,068 bp
GenBank #: CP094058
REBASE acronym: Hpyfe123
Org_num: 57357
All begin MPG08_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3895 | phosphatase PAP2 family protein | |||
| 3900 | M | M.HpyCHN4IX (98% identity) | M.Hpyfe123ORF3900P | |
| 3905 | S | S.HpyMA15ORF2475P (85% identity) | S.Hpyfe123ORF3900P | |
| 3910 | R | Hpyfe89ORF4905P (97% identity) | Hpyfe123ORF3900P | |
| 3915 | hydroxyethylthiazole kinase | |||
| 4190 | cadmium-translocating P-type ATPase | |||
| 4195 | S | S.HpyTW09XI (96% identity) | GAANNNNNNNNTGG | S.Hpyfe123ORF4195P |
| 4200 | outer membrane beta-barrel protein HofF | |||
| 5115 | motility associated factor glycosyltransferase | |||
| 5120 | R | HpySG26ORF3930P (95% identity) | CTANNNNNNTC | Hpyfe123ORF5125P |
| 5125 | M | M.HpyI019ORF2170P (91% identity) | CTANNNNNNTC | M.Hpyfe123ORF5125P |
| 5130 | S | S.HpySG15ORF2445P (99% identity) | CTANNNNNNTC | S.Hpyfe123ORF5125P |
| 5140 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpySG33ORF7330P (82% identity) | Hpyfe123ORF55P | |
| 60 | transcription termination factor NusA | |||
| 260 | ComF family protein | |||
| 265 | RM | HpyQ59ORFTP (98% identity) | CYANNNNNNTTC | Hpyfe123ORF265P |
| 270 | S | S.HpyMA23ORF6940P (95% identity) | S.Hpyfe123ORF265P | |
| 275 | DNA polymerase I | |||
| 1395 | serine O-acetyltransferase | |||
| 1400 | R | HpyK111IP (95% identity) | CATG | Hpyfe123ORF1405P |
| 1405 | M | M.Hpy238ORF5875P (98% identity) | CATG | M.Hpyfe123ORF1405P |
| 1410 | HAD family hydrolase | |||
| 1855 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1860 | M | M.HpyMA22XII (99% identity) | GCGC | M.Hpyfe123ORF1860P |
| 1865 | 144 aa hypothetical protein | |||
| 2035 | Laminin subunit alpha-2 precursor | |||
| 2040 | R | Hpyfe8ORF4870P (98% identity) | TCNNGA | Hpyfe123ORF2045P |
| 2045 | M | M.Hpyfe51ORF2055P (99% identity) | TCNNGA | M.Hpyfe123ORF2045P |
| 2050 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2830 | ATP-dependent helicase | |||
| 2835 | M | M.HpyCA2IX (98% identity) | GTNNAC | M.Hpyfe123ORF2835P |
| 2840 | R | HpyT027XIIP (95% identity) | GTNNAC | Hpyfe123ORF2835P |
| 2845 | flagellar hook protein FlgE | |||
| 3035 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3040 | M | M.HpyCHN7X (99% identity) | GTAC | M.Hpyfe123ORF3040P |
| 3045 | R | HpyUM077ORF2550P (99% identity) | GTAC | Hpyfe123ORF3040P |
| 3050 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4725 | (Fe-S)-binding protein | |||
| 4730 | RM | HpyJ022ORF3310P (91% identity) | Hpyfe123ORF4730P | |
| 4735 | outer membrane protein | |||
| 5020 | catalase | |||
| 5025 | R | HpyK115ORF2335P (99% identity) | ACNGT | Hpyfe123ORF5030P |
| 5030 | M | M.Hpyfe76ORF4780P (99% identity) | ACNGT | M.Hpyfe123ORF5030P |
| 5035 | translational GTPase TypA | |||
| 5040 | lipopolysaccharide heptosyltransferase family | |||
| 5045 | M | M.HpyMA23IV (98% identity) | ATTAAT | M.Hpyfe123ORF5045P |
| 5050 | Hop family outer membrane protein HopJ/HopK | |||
| 5555 | group I intron-associated PD-(D/E)XK | |||
| 5560 | M | M.HpyOK303ORFQP (100% identity) | GCNGC | M.Hpyfe123ORF5560P |
| 5565 | translation elongation factor 4 | |||
| 5990 | AAA family ATPase | |||
| 5995 | M | M.Hpyfe97ORF6090P (99% identity) | CCGG | M.Hpyfe123ORF5995P |
| 6000 | R | HpyPF16IVP (97% identity) | CCGG | Hpyfe123ORF5995P |
| 6005 | 204 aa hypothetical protein | |||
| 6005 | 204 aa hypothetical protein | |||
| 6010 | M | M.HpyK014ORF5330P (98% identity) | TCGA | M.Hpyfe123ORF6010P |
| 6015 | exodeoxyribonuclease VII large subunit | |||
| 6820 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6825 | M | M.HpyKG6IX (98% identity) | GATC | M.Hpyfe123ORF6825P |
| 6830 | R | HpyL003IXP (93% identity) | GATC | Hpyfe123ORF6825P |
| 6840 | ACP S-malonyltransferase | |||
| 6985 | DNA cytosine methyltransferase | |||
| 6990 | R | HpyBS22ORF7025P (95% identity) | CCTC | Hpyfe123ORF6995P |
| 6995 | M | M1.Hpyfe12ORF7025P (99% identity) | CCTC | M1.Hpyfe123ORF6995P |
| 7000 | M | M1.HpyOK30ORFNP (99% identity) | CCTC | M2.Hpyfe123ORF6995P |
| 7005 | agmatine deiminase | |||
| 7050 | DNA methyltransferase | |||
| ??? | R | HpyGC26ORFGP (98% identity) | Hpyfe123ORF7070P | |
| 7065 | 56 aa hypothetical protein | |||
| 7070 | M | M.Hpyfe95ORF6900P (40% identity) | M.Hpyfe123ORF7070P | |
| 7075 | 310 aa hypothetical protein | |||
| 7070 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyOK06ORFIP (93% identity) | Hpyfe123ORF7075P | |
| 7085 | carboxylating nicotinate-nucleotide | |||
| 7135 | copper response regulator transcription factor | |||
| 7140 | R | HpyDU15ORF7685P (80% identity) | GAAGA | Hpyfe123ORF7145P |
| ??? | M | M2.HpySG18VI (100% identity) | GAAGA | M1.Hpyfe123ORF7145P |
| 7155 | M | M1.HpySG18VI (100% identity) | GAAGA | M2.Hpyfe123ORF7145P |
| 7160 | site-specific DNA-methyltransferase | |||
| 7625 | 67 aa hypothetical protein | |||
| 7630 | R | HpyM6CORFCP (99% identity) | TGCA | Hpyfe123ORF7635P |
| 7635 | M | M.HpyV009XV (98% identity) | TGCA | M.Hpyfe123ORF7635P |
| 7640 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyAL02ORFIP (95% identity) | M.Hpyfe123ORF40P | |
| 50 | R | HpyTW04ORF7140P (97% identity) | Hpyfe123ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 620 | biotin synthase | |||
| 625 | R | Hpyfe88ORF655P (92% identity) | Hpyfe123ORF630P | |
| 630 | M | M.HpyP96ORFWP (98% identity) | M.Hpyfe123ORF630P | |
| 635 | DNA/RNA non-specific endonuclease | |||
| 7155 | site-specific DNA-methyltransferase | |||
| ??? | M | M.Hpyfe97ORF7225P (97% identity) | M.Hpyfe123ORF7160P | |
| 7165 | R | HpyUM065ORF2245P (96% identity) | Hpyfe123ORF7160P | |
| 7170 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3080 | type I glutamate--ammonia ligase | |||
| 3085 | R | Hpy3sGmrSD2P (91% identity) | Hpyfe123GmrSDP | |
| 3090 | 50S ribosomal protein L9 | |||
| 3660 | sel1 repeat family protein | |||
| 3665 | R | HpySG24GmrSD2P (96% identity) | Hpyfe123GmrSD2P | |
| 3670 | NAD(P)H-dependent oxidoreductase | |||