Helicobacter pylori Hpfe124 |
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Putative Helicobacter pylori Hpfe124 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,548,938 bp
GenBank #: CP094056
REBASE acronym: Hpyfe124
Org_num: 57358
All begin MPG66_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4760 | type I restriction endonuclease | |||
| 4765 | R | HpyK012XIIP (69% identity) | Hpyfe124ORF4770P | |
| 4770 | M | M.HpyF94ORF793P (97% identity) | M.Hpyfe124ORF4770P | |
| 4775 | S | S.HpySG04ORF2340P (99% identity) | S.Hpyfe124ORF4770P | |
| 4785 | RNA degradosome polyphosphate kinase | |||
| 7470 | M48 family metallopeptidase | |||
| 7475 | R | HpyMA08VP (97% identity) | CRTANNNNNNNTC | Hpyfe124ORF7480P |
| 7480 | M | M.Hpyfe74ORF7605P (97% identity) | CRTANNNNNNNTC | M.Hpyfe124ORF7480P |
| 7485 | S | S.HpySG24V (98% identity) | CRTANNNNNNNTC | S.Hpyfe124ORF7480P |
| 7490 | 59 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyCHN3ORF7345P (84% identity) | Hpyfe124ORF55P | |
| 60 | transcription termination factor NusA | |||
| 125 | outer membrane protein | |||
| 130 | R | Hpyfe71ORF135P (97% identity) | CCATC | Hpyfe124ORF135P |
| 135 | M | M2.HpyJ022IV (93% identity) | CCATC | M1.Hpyfe124ORF135P |
| 140 | M | M2.Hpyfe88ORF155P (100% identity) | CCATC | M2.Hpyfe124ORF135P |
| 145 | LptF/LptG family permease | |||
| 270 | ComF family protein | |||
| 275 | RM | Hpyfe12ORF280P (99% identity) | CYANNNNNNTTC | Hpyfe124ORF275P |
| 280 | S | S.HpyT026ORF7075P (95% identity) | CYANNNNNNTTC | S.Hpyfe124ORF275P |
| 285 | DNA polymerase I | |||
| 545 | UDP-N-acetylmuramate dehydrogenase | |||
| 550 | M | M.Hpyfe24ORF555P (99% identity) | M.Hpyfe124ORF550P | |
| 555 | R | HpyF234ORFSP (99% identity) | Hpyfe124ORF550P | |
| 560 | glycosyltransferase family 8 protein | |||
| 1420 | IceA2 protein | |||
| 1425 | M | M.Hpyfe23ORF1425P (98% identity) | CATG | M.Hpyfe124ORF1425P |
| 1430 | HAD family hydrolase | |||
| 1870 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1875 | M | M.Hpyfe78ORF5150P (99% identity) | GCGC | M.Hpyfe124ORF1875P |
| 1880 | 144 aa hypothetical protein | |||
| 2050 | Laminin subunit alpha-2 precursor | |||
| 2055 | R | Hpyfe85ORF2060P (99% identity) | TCNNGA | Hpyfe124ORF2060P |
| 2060 | M | M.Hpyfe120ORF2030P (99% identity) | TCNNGA | M.Hpyfe124ORF2060P |
| 2065 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2715 | ATP-dependent helicase | |||
| 2720 | M | M.HpyK050ORF4555P (98% identity) | GTNNAC | M.Hpyfe124ORF2720P |
| 2725 | flagellar hook protein FlgE | |||
| 2915 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2920 | M | M.HpyH390rORF2940P (99% identity) | GTAC | M.Hpyfe124ORF2920P |
| 2925 | R | HpyUM077ORF2550P (96% identity) | GTAC | Hpyfe124ORF2920P |
| 2930 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3670 | 59 aa hypothetical protein | |||
| 3675 | RM | Hpyfe4ORF3720P (93% identity) | Hpyfe124ORF3675P | |
| 3680 | (Fe-S)-binding protein | |||
| 4650 | catalase | |||
| 4655 | R | HpyF209ORF487P (99% identity) | ACGT | Hpyfe124ORF4660P |
| 4660 | M | M.Hpyfe96ORF4835P (99% identity) | ACGT | M.Hpyfe124ORF4660P |
| 4665 | GIY-YIG nuclease family protein | |||
| 4660 | DNA cytosine methyltransferase | |||
| 4665 | R | HpyLI13ORF2420P (99% identity) | ACNGT | Hpyfe124ORF4670P |
| 4670 | M | M.Hpyfe118ORF4995P (98% identity) | ACNGT | M.Hpyfe124ORF4670P |
| 4675 | translational GTPase TypA | |||
| 4680 | lipopolysaccharide heptosyltransferase family | |||
| 4685 | M | M.HpySG04II (98% identity) | ATTAAT | M.Hpyfe124ORF4685P |
| 4690 | Hop family outer membrane protein HopJ/HopK | |||
| 5395 | 125 aa hypothetical protein | |||
| 5400 | M | M.HpyUM111ORF160P (100% identity) | CTNAG | M.Hpyfe124ORF5400P |
| 5405 | R | HpyJA101VIIP (99% identity) | CTNAG | Hpyfe124ORF5400P |
| 5410 | polysaccharide deacetylase | |||
| 5645 | AAA family ATPase | |||
| 5650 | M | M.HpyJ015IV (100% identity) | CCGG | M.Hpyfe124ORF5650P |
| 5655 | R | HpyK050ORF1375P (96% identity) | CCGG | Hpyfe124ORF5650P |
| 5660 | exodeoxyribonuclease VII large subunit | |||
| 6070 | pseudaminic acid synthase | |||
| 6075 | R | R1.Hpyfe36ORF6220P (95% identity) | R1.Hpyfe124ORF6085P | |
| 6080 | R | R2.HpyK005ORF5855P (98% identity) | R2.Hpyfe124ORF6085P | |
| 6085 | M | M1.HpyTW18ORF895P (41% identity) | M.Hpyfe124ORF6085P | |
| 6090 | elongation factor P | |||
| 6355 | 346 aa hypothetical protein | |||
| 6360 | M | M.Hpy271ORFQP (98% identity) | GATC | M.Hpyfe124ORF6360P |
| 6365 | alpha-1,2-fucosyltransferase | |||
| 6750 | DNA cytosine methyltransferase | |||
| 6755 | R | HpyJA102VIP (95% identity) | CCTC | Hpyfe124ORF6760P |
| 6760 | M | M1.HpyJSHR31ORF13790P (98% identity) | CCTC | M1.Hpyfe124ORF6760P |
| 6765 | M | M1.Hpy192ORFUP (99% identity) | CCTC | M2.Hpyfe124ORF6760P |
| 6770 | TerC family protein | |||
| 6810 | DNA methyltransferase | |||
| 6815 | R | Hpy274ORF66P (99% identity) | GANTC | Hpyfe124ORF6820P |
| 6820 | M | M.Hpyfe64ORF7055P (100% identity) | GANTC | M.Hpyfe124ORF6820P |
| 6825 | 362 aa hypothetical protein | |||
| 6825 | 362 aa hypothetical protein | |||
| 6830 | RM | Hpyfe123ORF7075P (67% identity) | Hpyfe124ORF6830P | |
| 6835 | carboxylating nicotinate-nucleotide | |||
| 6885 | copper response regulator transcription factor | |||
| 6890 | R | HpyK027VP (97% identity) | GAAGA | Hpyfe124ORF6895P |
| 6895 | M | M2.HpyTW07IV (100% identity) | GAAGA | M1.Hpyfe124ORF6895P |
| 6900 | M | M2.Hpyfe49ORF7125P (100% identity) | GAAGA | M2.Hpyfe124ORF6895P |
| 6905 | site-specific DNA-methyltransferase | |||
| 7360 | 146 aa hypothetical protein | |||
| 7365 | R | HpyK008VIIIP (97% identity) | TGCA | Hpyfe124ORF7370P |
| 7370 | M | M.HpySH011XI (98% identity) | TGCA | M.Hpyfe124ORF7370P |
| 7375 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyLIM7ORFOP (97% identity) | M.Hpyfe124ORF40P | |
| 50 | R | Hpyfe89ORF40P (98% identity) | Hpyfe124ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 630 | type III restriction endonuclease subunit R | |||
| 635 | R | HpyK002ORF6625P (95% identity) | Hpyfe124ORF640P | |
| 640 | M | M.Hpyfe12ORF630P (96% identity) | M.Hpyfe124ORF640P | |
| 645 | DNA/RNA non-specific endonuclease | |||
| 6900 | site-specific DNA-methyltransferase | |||
| ??? | M | M.Hpyfe125ORF6840P (96% identity) | M.Hpyfe124ORF6905P | |
| 6910 | R | Hpy67ORF36P (96% identity) | Hpyfe124ORF6905P | |
| 6915 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2965 | type I glutamate--ammonia ligase | |||
| 2970 | R | HpySG19GmrSDP (79% identity) | Hpyfe124GmrSD2P | |
| 2975 | 50S ribosomal protein L9 | |||
| 3430 | SEL1-like repeat protein | |||
| 3435 | R | HpyYN483GmrSD2P (95% identity) | Hpyfe124GmrSDP | |
| 3440 | NAD(P)H-dependent oxidoreductase | |||