Helicobacter pylori Hpfe125 |
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Putative Helicobacter pylori Hpfe125 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,553,667 bp
GenBank #: CP094054
REBASE acronym: Hpyfe125
Org_num: 57359
All begin MPF85_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2605 | RNA degradosome polyphosphate kinase | |||
| 2615 | S | S.HpyK033ORF2445P (98% identity) | CTANNNNNNTTA | S.Hpyfe125ORF2620P |
| 2620 | M | M.Hpyfe7ORF4880P (98% identity) | CTANNNNNNTTA | M.Hpyfe125ORF2620P |
| 2625 | R | Hpyfe33ORF4885P (96% identity) | CTANNNNNNTTA | Hpyfe125ORF2620P |
| 2630 | type I restriction endonuclease | |||
| 4485 | hydroxyethylthiazole kinase | |||
| 4490 | R | HpyML1ORFXP (97% identity) | CCANNNNNNRTAY | Hpyfe125ORF4500P |
| 4495 | S | S.Hpyfe110ORF3765P (98% identity) | CCANNNNNNRTAY | S.Hpyfe125ORF4500P |
| 4500 | M | M.Hpyfe102ORF3145P (97% identity) | CCANNNNNNRTAY | M.Hpyfe125ORF4500P |
| 4505 | DNA cytosine methyltransferase | |||
| 7430 | M48 family metallopeptidase | |||
| 7435 | R | Hpyfe7ORF7500P (99% identity) | Hpyfe125ORF7440P | |
| 7440 | M | M.Hpyfe7ORF7500P (99% identity) | M.Hpyfe125ORF7440P | |
| 7445 | S | S.Hpy3192ORF400P (48% identity) | S.Hpyfe125ORF7440P | |
| 7450 | 62 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | type III restriction-modification system | |||
| 50 | RM | Hpyfe7ORF50P (90% identity) | Hpyfe125ORF50P | |
| 55 | transcription termination factor NusA | |||
| 255 | ComF family protein | |||
| 260 | RM | HpyKG5ORF6975P (99% identity) | CYANNNNNNTTC | Hpyfe125ORF260P |
| 265 | S | S1.Hpyfe7ORF260P (99% identity) | S1.Hpyfe125ORF260P | |
| 270 | S | S2.Hpyfe7ORF260P (89% identity) | S2.Hpyfe125ORF260P | |
| 275 | DNA polymerase I | |||
| 725 | agmatine/peptidylarginine deiminase | |||
| 730 | M | M2.Hpyfe7ORF6770P (100% identity) | CCTC | M1.Hpyfe125ORF730P |
| 735 | M | M1.Hpyfe7ORF6770P (99% identity) | M2.Hpyfe125ORF730P | |
| 740 | sodium/proline symporter PutP | |||
| 930 | HTH domain-containing protein | |||
| 935 | M | M.Hpyfe7ORF6570P (98% identity) | GATC | M.Hpyfe125ORF935P |
| 940 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1730 | exodeoxyribonuclease VII large subunit | |||
| 1735 | M | M.Hpyfe7ORF5760P (99% identity) | TCGA | M.Hpyfe125ORF1735P |
| 1740 | 203 aa hypothetical protein | |||
| 1740 | 203 aa hypothetical protein | |||
| 1745 | R | Hpyfe7ORF5745P (100% identity) | CCGG | Hpyfe125ORF1750P |
| 1750 | M | M.HpyK036IV (100% identity) | CCGG | M.Hpyfe125ORF1750P |
| 1755 | AAA family ATPase | |||
| 2180 | translation elongation factor 4 | |||
| 2185 | M | M.Hpyfe7ORF5310P (100% identity) | GCNGC | M.Hpyfe125ORF2185P |
| 2190 | 67 aa hypothetical protein | |||
| 2700 | Hop family outer membrane protein HopJ/HopK | |||
| 2705 | M | M.HpyMKF10ORF520P (98% identity) | ATTAAT | M.Hpyfe125ORF2705P |
| 2710 | lipopolysaccharide heptosyltransferase family | |||
| 2715 | translational GTPase TypA | |||
| 2720 | M | M.Hpyfe13ORF4960P (99% identity) | ACNGT | M.Hpyfe125ORF2720P |
| 2725 | R | Hpyfe7ORF4785P (100% identity) | ACNGT | Hpyfe125ORF2720P |
| 2730 | catalase | |||
| 2810 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2815 | M | M.HpyTW22IX (100% identity) | GTAC | M.Hpyfe125ORF2815P |
| 2820 | R | Hpyfe7ORF4690P (100% identity) | GTAC | Hpyfe125ORF2815P |
| 2825 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3665 | outer membrane protein | |||
| 3670 | RM | Hpyfe113ORF6620P (93% identity) | Hpyfe125ORF3670P | |
| 3675 | (Fe-S)-binding protein | |||
| 4500 | type I restriction-modification system subunit | |||
| 4505 | M | M.Hpyfe85ORF2990P (100% identity) | GGCC | M.Hpyfe125ORF4505P |
| 4510 | R | HpyK042ORF2510P (99% identity) | GGCC | Hpyfe125ORF4505P |
| 4515 | phosphatase PAP2 family protein | |||
| 4775 | flagellar hook protein FlgE | |||
| 4780 | R | HpyUM111ORF7085P (93% identity) | GTNNAC | Hpyfe125ORF4785P |
| 4785 | M | M.Hpyfe78ORF4310P (98% identity) | GTNNAC | M.Hpyfe125ORF4785P |
| 4790 | ATP-dependent helicase | |||
| 5435 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5440 | M | M.Hpyfe28ORF2045P (99% identity) | TCNNGA | M.Hpyfe125ORF5440P |
| 5445 | R | HpyISR3XIIIP (89% identity) | TCNNGA | Hpyfe125ORF5440P |
| 5450 | Laminin subunit alpha-2 precursor | |||
| 5625 | 144 aa hypothetical protein | |||
| 5630 | M | M.HpyJ015XII (99% identity) | GCGC | M.Hpyfe125ORF5630P |
| 5635 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6080 | HAD family hydrolase | |||
| 6085 | M | M.HpyL029I (98% identity) | CATG | M.Hpyfe125ORF6085P |
| 6090 | R | HpyK043IP (95% identity) | CATG | Hpyfe125ORF6085P |
| 6095 | serine O-acetyltransferase | |||
| 6775 | S41 family peptidase | |||
| 6780 | RM | Hpyfe7ORF6835P (94% identity) | Hpyfe125ORF6780P | |
| 6785 | carboxylating nicotinate-nucleotide | |||
| 6840 | site-specific DNA-methyltransferase | |||
| 6845 | R | Hpyfe7ORF6905P (100% identity) | GATATC | Hpyfe125ORF6850P |
| 6850 | M | M.Hpyfe7ORF6905P (100% identity) | GATATC | M.Hpyfe125ORF6850P |
| 6855 | site-specific DNA-methyltransferase | |||
| 7325 | 107 aa hypothetical protein | |||
| 7330 | R | Hpyfe7ORF7395P (100% identity) | TGCA | Hpyfe125ORF7335P |
| 7335 | M | M.Hpyfe7ORF7395P (100% identity) | TGCA | M.Hpyfe125ORF7335P |
| 7340 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyK117ORF7275P (97% identity) | M.Hpyfe125ORF40P | |
| 45 | R | Hpyfe102ORF40P (98% identity) | Hpyfe125ORF40P | |
| 50 | class I SAM-dependent DNA methyltransferase | |||
| 600 | biotin synthase | |||
| 605 | R | Hpyfe88ORF655P (96% identity) | Hpyfe125ORF610P | |
| 610 | M | M.HpyID5ORF6695P (97% identity) | M.Hpyfe125ORF610P | |
| 615 | DNA/RNA non-specific endonuclease | |||
| 6835 | copper response regulator transcription factor | |||
| ??? | M | M.Hpyfe13ORF7175P (97% identity) | M.Hpyfe125ORF6840P | |
| 6845 | EcoRV family type II restriction endonuclease | |||
| 6850 | Dam family site-specific | |||
| 6855 | site-specific DNA-methyltransferase | |||
| 6860 | R | Hpyfe62ORF6920P (95% identity) | Hpyfe125ORF6840P | |
| 6865 | rod shape-determining protein MreC | |||
| 6850 | Dam family site-specific | |||
| ??? | M | M.Hpyfe125ORF6840P (57% identity) | M.Hpyfe125ORFAP | |
| 6860 | DEAD/DEAH box helicase family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2855 | type I glutamate--ammonia ligase | |||
| 2860 | R | Hpyfe13GmrSD2P (95% identity) | Hpyfe125GmrSD2P | |
| 2865 | 50S ribosomal protein L9 | |||
| 3435 | sel1 repeat family protein | |||
| 3440 | R | Hpyfe7GmrSD2P (99% identity) | Hpyfe125GmrSDP | |
| 3445 | NAD(P)H-dependent oxidoreductase | |||