Helicobacter pylori Hpfe126 |
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Putative Helicobacter pylori Hpfe126 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,619,620 bp
GenBank #: CP094052
REBASE acronym: Hpyfe126
Org_num: 57360
All begin MPF87_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3365 | cadmium-translocating P-type ATPase | |||
| 3370 | S | S.HpyP89ORFQP (98% identity) | CAANNNNNNNRTC | S.Hpyfe126ORF3370P |
| 3375 | outer membrane beta-barrel protein HofF | |||
| 4970 | type I restriction endonuclease | |||
| 4975 | R | HpyQ56ORFIP (88% identity) | CTANNNNNNTC | Hpyfe126ORF4980P |
| 4980 | M | M.HpyR06VII (92% identity) | CTANNNNNNTC | M.Hpyfe126ORF4980P |
| 4985 | S | S.HpyCHN6ORF2240P (98% identity) | CTANNNNNNTC | S.Hpyfe126ORF4980P |
| 4995 | RNA degradosome polyphosphate kinase | |||
| 7595 | M48 family metallopeptidase | |||
| 7600 | R | Hpyfe74ORF7605P (97% identity) | Hpyfe126ORF7605P | |
| 7605 | M | M.HpyP89ORFIP (98% identity) | M.Hpyfe126ORF7605P | |
| 7610 | CAAX protease | |||
| 7615 | S | S.HpyGT04V (45% identity) | S.Hpyfe126ORF7605P | |
| 7620 | integrase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | type III restriction-modification system | |||
| ??? | RM | HpyF227ORFZP (93% identity) | Hpyfe126ORF50P | |
| 60 | 190 aa hypothetical protein | |||
| 285 | ComF family protein | |||
| 290 | RM | Hpyfe12ORF280P (99% identity) | CYANNNNNNTTC | Hpyfe126ORF290P |
| 295 | S | S.HpyOki128ORF6635P (50% identity) | S.Hpyfe126ORF290AP | |
| 300 | S | S.HpySG12ORF7005P (42% identity) | S.Hpyfe126ORF290BP | |
| 305 | DNA polymerase I | |||
| 575 | UDP-N-acetylmuramate dehydrogenase | |||
| 580 | R | HpyCHN2IXP (99% identity) | GAATTC | Hpyfe126ORF585P |
| 585 | M | M.Hpyfe77ORF545P (100% identity) | GAATTC | M.Hpyfe126ORF585P |
| 590 | glycosyltransferase family 8 protein | |||
| 1475 | serine O-acetyltransferase | |||
| 1480 | R | HpySG14IP (95% identity) | CATG | Hpyfe126ORF1485P |
| 1485 | M | M.HpySG12I (99% identity) | CATG | M.Hpyfe126ORF1485P |
| 1490 | HAD family hydrolase | |||
| 1945 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1950 | M | M.HpyTW24XV (98% identity) | M.Hpyfe126ORF1950P | |
| 1955 | 144 aa hypothetical protein | |||
| 2125 | Laminin subunit alpha-2 precursor | |||
| 2130 | R | Hpyfe73ORF2065P (100% identity) | TCNNGA | Hpyfe126ORF2135P |
| 2135 | M | M.Hpyfe37ORF2030P (98% identity) | TCNNGA | M.Hpyfe126ORF2135P |
| 2140 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2790 | ATP-dependent helicase | |||
| 2795 | M | M.HpyIR9IX (98% identity) | GTNNAC | M.Hpyfe126ORF2795P |
| 2800 | R | Hpyfe77ORF5110P (96% identity) | GTNNAC | Hpyfe126ORF2795P |
| 2805 | flagellar hook protein FlgE | |||
| 3850 | 3-5 exonuclease | |||
| 3855 | R | Hpyfe85ORF3790P (99% identity) | Hpyfe126ORF3860P | |
| 3860 | M | M.HpyTN2ORF7450P (99% identity) | M.Hpyfe126ORF3860P | |
| 3865 | 3-5 exonuclease | |||
| 3945 | outer membrane protein | |||
| 3950 | RM | HpyH390rORF3785P (93% identity) | Hpyfe126ORF3950P | |
| 3955 | (Fe-S)-binding protein | |||
| 4765 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4770 | R | HpyUM038ORF6930P (97% identity) | GTAC | Hpyfe126ORF4775P |
| 4775 | M | M.Hpyfe97ORF3090P (99% identity) | GTAC | M.Hpyfe126ORF4775P |
| 4780 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4860 | catalase | |||
| 4865 | R | HpyT016ORF2465P (99% identity) | ACGT | Hpyfe126ORF4870P |
| 4870 | M | M.HpySG18ORF4970P (99% identity) | ACGT | M.Hpyfe126ORF4870P |
| 4875 | GIY-YIG nuclease family protein | |||
| 4870 | DNA cytosine methyltransferase | |||
| 4875 | R | Hpyfe74ORF4930P (99% identity) | ACNGT | Hpyfe126ORF4880P |
| 4880 | M | M.HpyTW21ORF2350P (88% identity) | ACNGT | M.Hpyfe126ORF4880P |
| 4885 | translational GTPase TypA | |||
| 4890 | lipopolysaccharide heptosyltransferase family | |||
| 4895 | M | M.Hpy5ORF5760P (98% identity) | ATTAAT | M.Hpyfe126ORF4895P |
| 4900 | Hop family outer membrane protein HopJ/HopK | |||
| 5850 | AAA family ATPase | |||
| 5855 | M | M.HpyU011IV (99% identity) | CCGG | M.Hpyfe126ORF5855P |
| 5860 | R | Hpys8ORF4510P (95% identity) | CCGG | Hpyfe126ORF5855P |
| 5865 | 204 aa hypothetical protein | |||
| 5865 | 204 aa hypothetical protein | |||
| 5870 | M | M.Hpyfe24ORF5940P (100% identity) | TCGA | M.Hpyfe126ORF5870P |
| 5875 | exodeoxyribonuclease VII large subunit | |||
| 6535 | ACP S-malonyltransferase | |||
| 6545 | R | Hpyfe113ORF4095P (95% identity) | GATC | Hpyfe126ORF6550P |
| 6550 | M | M.HpyK033V (98% identity) | GATC | M.Hpyfe126ORF6550P |
| 6555 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6920 | sodium/proline symporter PutP | |||
| 6925 | M | M1.Hpyfe49ORF6980P (83% identity) | M1.Hpyfe126ORF6925P | |
| 6930 | M | M1.HpyT006V (97% identity) | CCTC | M2.Hpyfe126ORF6925P |
| 6935 | outer membrane protein | |||
| 6980 | DNA methyltransferase | |||
| 6985 | R | Hpyfe29ORF6865P (98% identity) | GANTC | Hpyfe126ORF6990P |
| 6990 | M | M.Hpyfe99ORF7240P (100% identity) | GANTC | M.Hpyfe126ORF6990P |
| 6995 | 351 aa hypothetical protein | |||
| 6990 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyP29ORFGP (92% identity) | Hpyfe126ORF6995P | |
| 7005 | carboxylating nicotinate-nucleotide | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyMA21ORF7455P (97% identity) | M.Hpyfe126ORF40P | |
| 45 | R | HpyMA06ORF7425P (97% identity) | Hpyfe126ORF40P | |
| 50 | 776 aa hypothetical protein | |||
| 705 | biotin synthase | |||
| 710 | R | HpySG12XIVP (91% identity) | Hpyfe126ORF715P | |
| 715 | M | M.Hpyfe127ORF710P (97% identity) | M.Hpyfe126ORF715P | |
| 720 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4140 | NAD(P)H-dependent oxidoreductase | |||
| 4145 | R | Hpyfe70GmrSDP (96% identity) | Hpyfe126GmrSDP | |
| 4150 | sel1 repeat family protein | |||
| 4725 | 50S ribosomal protein L9 | |||
| 4730 | R | HpyP82GmrSDP (87% identity) | Hpyfe126GmrSD2P | |
| 4735 | type I glutamate--ammonia ligase | |||