Helicobacter pylori Hpfe127 |
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Putative Helicobacter pylori Hpfe127 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,577,655 bp
GenBank #: CP094051
REBASE acronym: Hpyfe127
Org_num: 57361
All begin MPG10_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3075 | DNA cytosine methyltransferase | |||
| 3080 | M | M.HpyK032XIV (95% identity) | M.Hpyfe127ORF3080P | |
| 3085 | S | S.HpyDO1ORF2455P (46% identity) | S.Hpyfe127ORF3080P | |
| 3090 | R | HpyUM077ORF5650P (96% identity) | Hpyfe127ORF3080P | |
| 3095 | hydroxyethylthiazole kinase | |||
| 4960 | motility associated factor glycosyltransferase | |||
| ??? | R | Hpyfe113ORF5760P (94% identity) | Hpyfe127ORF4980P | |
| 4980 | M | M.Hpy1100ORFGP (98% identity) | M.Hpyfe127ORF4980P | |
| 4985 | S | S.Hpyfe93ORF4995P (92% identity) | S.Hpyfe127ORF4980P | |
| 4990 | restriction endonuclease subunit S | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 713 aa hypothetical protein | |||
| 60 | RM | Hpyfe52ORF55P (91% identity) | Hpyfe127ORF60P | |
| 65 | transcription termination factor NusA | |||
| 330 | VRR-NUC domain-containing protein | |||
| 335 | R | HpyK047ORF6810P (98% identity) | Hpyfe127ORF340P | |
| 340 | M | M.Hpyfe61ORF300P (94% identity) | M.Hpyfe127ORF340P | |
| 345 | restriction endonuclease subunit S | |||
| 350 | S | S.Hpyfe23ORF300P (43% identity) | S.Hpyfe127ORF340P | |
| 355 | DNA polymerase I | |||
| 620 | UDP-N-acetylmuramate dehydrogenase | |||
| 625 | R | HpyBT112ORF610P (99% identity) | GAATTC | Hpyfe127ORF630P |
| 630 | M | M.HpyV009VIII (99% identity) | GAATTC | M.Hpyfe127ORF630P |
| 635 | glycosyltransferase family 8 protein | |||
| 1475 | IceA2 protein | |||
| 1480 | M | M.HpyK025I (98% identity) | CATG | M.Hpyfe127ORF1480P |
| 1485 | HAD family hydrolase | |||
| 1930 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1935 | M | M.HpyMA05XIV (98% identity) | GCGC | M.Hpyfe127ORF1935P |
| 1940 | 144 aa hypothetical protein | |||
| 2115 | Laminin subunit alpha-2 precursor | |||
| 2120 | R | Hpyfe93ORF2050P (100% identity) | TCNNGA | Hpyfe127ORF2125P |
| 2125 | M | M.Hpyfe92ORF2245P (100% identity) | TCNNGA | M.Hpyfe127ORF2125P |
| 2130 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2795 | ATP-dependent helicase | |||
| ??? | M | M.HpyHP32ORF4340P (94% identity) | M.Hpyfe127ORF2800P | |
| ??? | R | Hpyfe73ORF2730P (97% identity) | Hpyfe127ORF2800P | |
| 2805 | flagellar hook protein FlgE | |||
| 3065 | phosphatase PAP2 family protein | |||
| 3070 | R | HpyMKF10ORF557P (98% identity) | GGCC | Hpyfe127ORF3075P |
| 3075 | M | M.HpysHP34ORF6260P (100% identity) | GGCC | M.Hpyfe127ORF3075P |
| 3080 | type I restriction-modification system subunit | |||
| 3945 | 62 aa hypothetical protein | |||
| 3950 | RM | Hpyfe126ORF3950P (92% identity) | Hpyfe127ORF3950P | |
| 3955 | (Fe-S)-binding protein | |||
| 4855 | catalase | |||
| 4860 | R | HpyCHN2ORF2355P (98% identity) | ACGT | Hpyfe127ORF4865P |
| 4865 | M | M.Hpyfe2ORF4945P (99% identity) | ACGT | M.Hpyfe127ORF4865P |
| 4870 | GIY-YIG nuclease family protein | |||
| 4865 | DNA cytosine methyltransferase | |||
| 4870 | R | Hpyfe61ORF5010P (99% identity) | ACNGT | Hpyfe127ORF4875P |
| 4875 | M | M.HpyTW10ORF2360P (98% identity) | ACNGT | M.Hpyfe127ORF4875P |
| 4880 | translational GTPase TypA | |||
| 4885 | lipopolysaccharide heptosyltransferase family | |||
| 4890 | M | M.HpyMA18V (98% identity) | ATTAAT | M.Hpyfe127ORF4890P |
| 4895 | Hop family outer membrane protein HopJ/HopK | |||
| 5620 | 125 aa hypothetical protein | |||
| 5625 | M | M.Hpyfe17ORF5490P (100% identity) | CTNAG | M.Hpyfe127ORF5625P |
| 5630 | R | HpyK110VIP (99% identity) | CTNAG | Hpyfe127ORF5625P |
| 5635 | polysaccharide deacetylase | |||
| 5865 | AAA family ATPase | |||
| 5870 | M | M.Hpyfe3ORF5780P (99% identity) | CCGG | M.Hpyfe127ORF5870P |
| 5875 | R | HpyMA06VIIP (97% identity) | CCGG | Hpyfe127ORF5870P |
| 5880 | exodeoxyribonuclease VII large subunit | |||
| 6550 | ACP S-malonyltransferase | |||
| 6560 | R | HpyT030IXP (96% identity) | GATC | Hpyfe127ORF6565P |
| 6565 | M | M.HpySG12VII (97% identity) | GATC | M.Hpyfe127ORF6565P |
| 6570 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6950 | DNA cytosine methyltransferase | |||
| 6955 | R | HpyMA23XP (96% identity) | CCTC | Hpyfe127ORF6960P |
| 6960 | M | M2.HpyK047IVP (99% identity) | CCTC | M1.Hpyfe127ORF6960P |
| 6965 | M | M2.Hpy1838CORF14410P (98% identity) | CCTC | M2.Hpyfe127ORF6960P |
| 6970 | agmatine deiminase | |||
| 7015 | DNA methyltransferase | |||
| 7020 | R | Hpy274ORF66P (98% identity) | GANTC | Hpyfe127ORF7025P |
| 7025 | M | M.Hpyfe58ORF7100P (99% identity) | GANTC | M.Hpyfe127ORF7025P |
| 7030 | DNA methyltransferase | |||
| 7030 | DNA methyltransferase | |||
| 7035 | RM | HpyBT112ORF7075P (89% identity) | Hpyfe127ORF7035P | |
| 7040 | carboxylating nicotinate-nucleotide | |||
| 7550 | DUF5343 domain-containing protein | |||
| 7555 | M | M.Hpyfe114ORF7425P (99% identity) | M.Hpyfe127ORF7555P | |
| 7560 | type II restriction endonuclease | |||
| 7555 | DNA cytosine methyltransferase | |||
| 7560 | R | HpySG18XIIIP (98% identity) | TGCA | Hpyfe127ORF7565P |
| 7565 | M | M.Hpyfe79ORF7640P (98% identity) | TGCA | M.Hpyfe127ORF7565P |
| 7570 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyLI21ORF7600P (93% identity) | M.Hpyfe127ORF40P | |
| 50 | R | Hpyfe113ORF2950P (97% identity) | Hpyfe127ORF40P | |
| 55 | 713 aa hypothetical protein | |||
| 700 | type III restriction endonuclease subunit R | |||
| 705 | R | HpyTW03ORF6585P (94% identity) | Hpyfe127ORF710P | |
| 710 | M | M.Hpyfe126ORF715P (97% identity) | M.Hpyfe127ORF710P | |
| 715 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4130 | NAD(P)H-dependent oxidoreductase | |||
| 4135 | R | Hpy458GmrSDP (92% identity) | Hpyfe127GmrSD2P | |
| 4140 | sel1 repeat family protein | |||
| 4720 | 50S ribosomal protein L9 | |||
| 4725 | R | HpyK041GmrSDP (91% identity) | Hpyfe127GmrSDP | |
| 4730 | type I glutamate--ammonia ligase | |||