Dickeya dianthicola LAR.16.03.LID |
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Putative Dickeya dianthicola LAR.16.03.LID RM systems
Ref: Oulghazi,S. et al. Microorganisms 8 (6), E895 (2020)
REBASE ref # 34206
Complete sequence: 4,976,211 bp
GenBank #: CP038499
REBASE acronym: DdiLTD
Org_num: 57164
All begin E4659_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3300 | 208 aa hypothetical protein | |||
| 3305 | S | S.Ddi3534ORFCP (100% identity) | S.DdiLTDORF3310P | |
| 3310 | M | M.Ddi3534ORFCP (100% identity) | M.DdiLTDORF3310P | |
| 3315 | R | Ddi3534ORFCP (100% identity) | DdiLTDORF3310P | |
| 3320 | ribosomal-protein-alanine N-acetyltransferase | |||
| 5155 | M48 family peptidase | |||
| 5160 | R | Ddi3534ORFBP (100% identity) | DdiLTDORF5185P | |
| 5165 | Appr-1-p processing protein | |||
| 5170 | DUF4433 domain-containing protein | |||
| 5175 | DUF4433 domain-containing protein | |||
| 5180 | S | S.DdiPA24ORF4615P (100% identity) | S.DdiLTDORF5185P | |
| 5185 | M | M.DdiPA24ORF4615P (100% identity) | M.DdiLTDORF5185P | |
| 5190 | transcription factor | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2180 | DNA cytosine methyltransferase | |||
| 2185 | R | DdiPA24ORF2190P (100% identity) | CCWGG | DdiLTDORF2185P |
| 2190 | MFS transporter | |||
| 3990 | 76 aa hypothetical protein | |||
| 3995 | M | M.DdiPA24ORF3940P (100% identity) | GATC | M1.DdiLTDORF3995P |
| 4000 | M | M.DdiPA24ORF3945P (100% identity) | M2.DdiLTDORF3995P | |
| 4005 | replication endonuclease | |||
| 4010 | R | DdiPA24ORF3960P (100% identity) | DdiLTDORF3995P | |
| 4015 | DNA adenine methylase | |||
| 4010 | 506 aa hypothetical protein | |||
| 4015 | M | M.DdiPA24ORF3960P (100% identity) | TGGCCA | M.DdiLTDORF4015P |
| 4020 | transcriptional regulator | |||
| 4535 | GTPase | |||
| 4540 | M | M.DzeMS2ORF3975P (89% identity) | M.DdiLTDORF4540P | |
| 4545 | DNA topoisomerase III | |||
| 7930 | 857 aa hypothetical protein | |||
| 7935 | M | M.DdiPA24ORF7340P (100% identity) | M.DdiLTDORF7935P | |
| 7940 | DUF1738 domain-containing protein | |||
| 8370 | phosphonate metabolism protein PhnP | |||
| 8375 | R | DdiPA24ORF7785P (100% identity) | CCATGG | DdiLTDORF8380P |
| 8380 | M | M.DdiPA24ORF7785P (96% identity) | M.DdiLTDORF8380P | |
| 8385 | phosphonate ABC transporter ATP-binding protein | |||
| 16730 | 132 aa hypothetical protein | |||
| 16735 | R | DdiPA24ORF15945P (100% identity) | GTGCAC | DdiLTDORF16740P |
| 16740 | M | M.DdiPA24ORF15945P (100% identity) | GTGCAC | M.DdiLTDORF16740P |
| 16745 | recombinase family protein | |||
| 20845 | ribulose-phosphate 3-epimerase | |||
| 20850 | M | M.Dsp2401ORFJP (100% identity) | GATC | M.DdiLTDDamP |
| 20855 | SPOR domain-containing protein | |||