Helicobacter pylori JSHR 6 |
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Putative Helicobacter pylori JSHR 6 RM systems
Ref: Yokota,K. et al. Helicobacter e12874 (2022)
REBASE ref # 34238
Complete sequence: 1,551,197 bp
GenBank #: AP023347
REBASE acronym: HpyJSHR6
Org_num: 57363
All begin JSHR6_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 8960 | hydroxyethylthiazole kinase ThiM | |||
| 8970 | R | HpyV009ORF2565P (95% identity) | HpyJSHR6ORF8990P | |
| 8980 | S | S2.HpyME23ORF4155P (94% identity) | S.HpyJSHR6ORF8990P | |
| 8990 | M | M.Hpy154ORF4345P (51% identity) | M.HpyJSHR6ORF8990BP | |
| 9000 | M | M.HpyTN2ORF5590P (45% identity) | M.HpyJSHR6ORF8990AP | |
| 9010 | integral membrane protein | |||
| 9550 | type I restriction endonuclease subunit R | |||
| 9560 | R | HpyGU71CORFSP (86% identity) | HpyJSHR6ORF9570P | |
| 9570 | M | M.Hpy24ORF460P (96% identity) | M.HpyJSHR6ORF9570P | |
| 9580 | S | S.Hpy24ORF460P (99% identity) | S.HpyJSHR6ORF9570P | |
| 9590 | polyphosphate kinase Ppk | |||
| 14860 | 95 aa hypothetical protein | |||
| 14870 | R | HpyDU8AORFZP (87% identity) | HpyJSHR6ORF14880P | |
| 14880 | M | M.Hpy24ORF1436P (82% identity) | M.HpyJSHR6ORF14880P | |
| 14890 | type I restriction enzyme M protein | |||
| 14900 | CAAX protease | |||
| 14910 | S | S.Hpy24ORF1436P (99% identity) | S.HpyJSHR6ORF14880P | |
| 14920 | FAD-dependent thymidylate synthase ThyX | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 90 | type III restriction enzyme Res | |||
| 100 | RM | Hpyfe28ORF55P (88% identity) | HpyJSHR6ORF100P | |
| 110 | 50 aa hypothetical protein | |||
| 280 | outer membrane protein | |||
| 290 | R | HpyMKM6ORF1401P (74% identity) | CCATC | HpyJSHR6ORF310P |
| 300 | 70 aa hypothetical protein | |||
| 310 | M | M2.HpyMKM6ORF1401P (100% identity) | CCATC | M1.HpyJSHR6ORF310P |
| 320 | M | M2.Hpyfe88ORF155P (99% identity) | CCATC | M2.HpyJSHR6ORF310P |
| 330 | permease | |||
| 2780 | IceA2 protein | |||
| 2790 | M | M.HpyF227ORFJP (93% identity) | CATG | M.HpyJSHR6ORF2790P |
| 2800 | haloacid dehalogenase | |||
| 3620 | flgM protein | |||
| 3630 | M | M.HpyK109X (99% identity) | GCGC | M.HpyJSHR6ORF3630P |
| 3640 | flagellar protein FlgN | |||
| 3940 | Laminin subunit alpha-2 | |||
| 3950 | R | HpyID1XIP (99% identity) | TCNNGA | HpyJSHR6ORF3960P |
| 3960 | M | M.Hpyfe11ORF5775P (100% identity) | TCNNGA | M.HpyJSHR6ORF3960P |
| 3970 | biotin carboxylase AccC | |||
| 5300 | DNA helicase | |||
| 5310 | M | M.HpyK25IX (97% identity) | GTNNAC | M.HpyJSHR6ORF5310P |
| 5320 | R | Hpy4109ORFZP (99% identity) | GTNNAC | HpyJSHR6ORF5310P |
| 5330 | flagellar hook protein FlgE | |||
| 5700 | DNA gyrase subunit B GyrB | |||
| 5710 | M | M.Hpy24ORF866P (99% identity) | GTAC | M.HpyJSHR6ORF5710P |
| 5720 | R | Hpyfe52ORF2915P (98% identity) | GTAC | HpyJSHR6ORF5710P |
| 5730 | PG-modifying enzyme, HdpA | |||
| 7350 | outer membrane protein | |||
| 7360 | RM | HpyT029ORF3515P (89% identity) | HpyJSHR6ORF7360P | |
| 7370 | anaerobic glycerol-3-phosphate dehydrogenase | |||
| 8390 | outer membrane protein HofF | |||
| 8400 | R | Hpy70ORF586P (100% identity) | HpyJSHR6ORF8410P | |
| 8410 | M | M.Hpy70ORF586P (99% identity) | M.HpyJSHR6ORF8410P | |
| 8420 | cadmium, zinc and cobalt-transporting ATPase | |||
| 9320 | catalase-like protein | |||
| 9330 | R | Hpyfe102ORF4925P (100% identity) | ACGT | HpyJSHR6ORF9340P |
| 9340 | M | M.Hpy78ORF499P (100% identity) | ACGT | M.HpyJSHR6ORF9340P |
| 9350 | 44 aa hypothetical protein | |||
| 9340 | cytosine-specific methyltransferase | |||
| ??? | R | Hpyfe1ORF4990P (98% identity) | ACNGT | HpyJSHR6ORF9370P |
| 9370 | M | M.HpyMKM1ORF487P (100% identity) | ACNGT | M.HpyJSHR6ORF9370P |
| 9380 | GTP-binding protein TypA | |||
| 10410 | 141 aa hypothetical protein | |||
| 10420 | M | M.Hpyoh1ORF4535P (99% identity) | GCNGC | M.HpyJSHR6ORF10420P |
| 10430 | GTP-binding protein LepA | |||
| 11270 | ATP-dependent Clp protease, ATP-binding subunit | |||
| 11280 | M | M.HpyP30ORFAP (100% identity) | CCGG | M.HpyJSHR6ORF11280P |
| 11290 | R | Hpy1867AIVP (98% identity) | CCGG | HpyJSHR6ORF11280P |
| 11300 | exodeoxyribonuclease VII large subunit XseA | |||
| 12610 | malonyl CoA-acyl carrier protein transacylase | |||
| ??? | R | Hpy5ORF2380P (100% identity) | GATC | HpyJSHR6ORF12640P |
| 12640 | M | M.Hpyfe49ORF6800P (97% identity) | GATC | M.HpyJSHR6ORF12640P |
| 12650 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 13510 | sodium/proline symporter PutP | |||
| 13520 | M | M2.Hpy24ORF60P (100% identity) | CCTC | M1.HpyJSHR6ORF13520P |
| ??? | M | M2.Hpyfe38ORF6870P (97% identity) | CCTC | M2.HpyJSHR6ORF13520P |
| 13550 | integral membrane protein | |||
| 13620 | carboxyl-terminal protease Prc | |||
| 13630 | R | HpyAR9IVP (97% identity) | GANTC | HpyJSHR6ORF13640P |
| 13640 | M | M.Hpyfe29ORF6865P (99% identity) | GANTC | M.HpyJSHR6ORF13640P |
| 13650 | DNA methyltransferase | |||
| 13660 | 228 aa hypothetical protein | |||
| 13670 | RM | HpyK049ORF270P (66% identity) | HpyJSHR6ORF13670P | |
| 13680 | nicotinate-nucleotide pyrophosphorylase NadC | |||
| 13780 | OmpR family DNA-binding response regulator | |||
| 13790 | R | Hpyfe82ORF7075P (98% identity) | GAAGA | HpyJSHR6ORF13800P |
| 13800 | M | M2.HpyDU7AORFCP (100% identity) | GAAGA | M1.HpyJSHR6ORF13800P |
| 13810 | M | M1.HpyTW19VI (99% identity) | GAAGA | M2.HpyJSHR6ORF13800P |
| 13820 | site-specific DNA-methyltransferase | |||
| 14670 | 142 aa hypothetical protein | |||
| 14680 | R | HpyJ029XIIP (100% identity) | TGCA | HpyJSHR6ORF14690P |
| 14690 | M | M.HpyOK88ORFHP (99% identity) | TGCA | M.HpyJSHR6ORF14690P |
| 14700 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 60 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpySH011ORF7260P (96% identity) | M.HpyJSHR6ORF70P | |
| 90 | R | HpyT029ORF7135P (97% identity) | HpyJSHR6ORF70P | |
| 100 | 1114 aa hypothetical protein | |||
| 1240 | biotin synthase BioB | |||
| 1250 | R | HpyDU7AORFOP (90% identity) | HpyJSHR6ORF1260P | |
| 1260 | M | M.HpyJA104ORF320P (98% identity) | M.HpyJSHR6ORF1260P | |
| 1270 | 110 aa hypothetical protein | |||
| 13810 | type IIS restriction enzyme M2 protein | |||
| ??? | M | M.HpyGU83AORFIP (97% identity) | M.HpyJSHR6ORF13820P | |
| 13840 | R | HpyK25XIIIP (95% identity) | HpyJSHR6ORF13820P | |
| 13850 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5780 | glutamine synthetase GlnA | |||
| 5790 | R | HpyK28GmrSD2P (83% identity) | HpyJSHR6GmrSD2P | |
| 5800 | 50S ribosomal protein L9 RplI | |||
| 6880 | sel1 repeat family protein | |||
| 6890 | R | HpyHP32GmrSD2P (97% identity) | HpyJSHR6GmrSDP | |
| 6900 | modulator of drug activity | |||