Helicobacter pylori JSHR31 |
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Putative Helicobacter pylori JSHR31 RM systems
Ref: Yokota,K. et al. Helicobacter e12874 (2022)
REBASE ref # 34238
Complete sequence: 1,610,599 bp
GenBank #: AP023345
REBASE acronym: HpyJSHR31
Org_num: 57364
All begin JSHR31_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 9000 | hydroxyethylthiazole kinase ThiM | |||
| 9010 | R | HpyF225ORFTP (96% identity) | CTANNNNNNNNTTC | HpyJSHR31ORF9030P |
| 9020 | S | S.HpyJSHR31ORF8440P (100% identity) | CTANNNNNNNNTTC | S.HpyJSHR31ORF9030P |
| 9030 | M | M.HpyK036XVI (96% identity) | CTANNNNNNNNTTC | M.HpyJSHR31ORF9030P |
| 9040 | cytosine-specific methyltransferase | |||
| 9560 | PH domain-containing protein | |||
| 9570 | R | Hpyfe15ORF4880P (95% identity) | CCANNNNNNTAA | HpyJSHR31ORF9580P |
| 9580 | M | M.HpySG17XII (53% identity) | CCANNNNNNTAA | M.HpyJSHR31ORF9580P |
| 9590 | S | S.Hpyfe58ORF5150P (99% identity) | CCANNNNNNTAA | S.HpyJSHR31ORF9580P |
| 9600 | polyphosphate kinase Ppk | |||
| 15090 | metal-dependent hydrolase | |||
| 15100 | R | HpyTW09VIIP (95% identity) | HpyJSHR31ORF15120P | |
| 15110 | 224 aa hypothetical protein | |||
| 15120 | M | M.HpyR08VII (69% identity) | M.HpyJSHR31ORF15120P | |
| 15130 | CAAX protease | |||
| 15140 | S | S.HpyK032ORF355P (95% identity) | S.HpyJSHR31ORF15120P | |
| 15150 | FAD-dependent thymidylate synthase ThyX | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 90 | type III restriction enzyme Res | |||
| 100 | RM | HpyCHN10ORF7255P (92% identity) | HpyJSHR31ORF100P | |
| 110 | transcription elongation factor NusA | |||
| 240 | outer membrane protein | |||
| 250 | R | Hpyfe27ORF150P (75% identity) | CCATC | HpyJSHR31ORF270P |
| 260 | 130 aa hypothetical protein | |||
| 270 | M | M2.HpyV004III (99% identity) | CCATC | M1.HpyJSHR31ORF270P |
| 280 | M | M1.HpyT027III (100% identity) | CCATC | M2.HpyJSHR31ORF270P |
| 290 | permease | |||
| 540 | amidophosphoribosyltransferase | |||
| 550 | RM | Hpyfe12ORF280P (98% identity) | CYANNNNNNTTC | HpyJSHR31ORF550P |
| 560 | S | S.HpyP29ORFBP (96% identity) | S.HpyJSHR31ORF550P | |
| 570 | DNA polymerase I PolA | |||
| 1110 | 114 aa hypothetical protein | |||
| 1120 | R | HpyV001VIP (100% identity) | GAATTC | HpyJSHR31ORF1130P |
| 1130 | M | M.HpyV001VI (100% identity) | GAATTC | M.HpyJSHR31ORF1130P |
| 1140 | lipopolysaccharide 1,2-glucosyltransferase RfaJ | |||
| 2730 | serine O-acetyltransferase CysE | |||
| 2740 | R | HpyOK104ORFAP (43% identity) | CATG | R1.HpyJSHR31ORF2760P |
| 2750 | R | HpyID8IP (31% identity) | CATG | R2.HpyJSHR31ORF2760P |
| 2760 | M | M.HpyK025I (99% identity) | CATG | M.HpyJSHR31ORF2760P |
| 2770 | haloacid dehalogenase | |||
| 3600 | flgM protein | |||
| 3610 | M | M.Hpyfe107ORF6245P (99% identity) | GCGC | M.HpyJSHR31ORF3610P |
| 3620 | flagellar protein FlgN | |||
| 3930 | Laminin subunit alpha-2 | |||
| ??? | R | HpyLI28IXP (98% identity) | TCNNGA | HpyJSHR31ORF3960P |
| 3960 | M | M.Hpy21ORF222P (99% identity) | TCNNGA | M.HpyJSHR31ORF3960P |
| 3970 | biotin carboxylase AccC | |||
| 5260 | DNA helicase | |||
| 5270 | M | M.Hpy28ORF918P (98% identity) | GTNNAC | M.HpyJSHR31ORF5270P |
| 5280 | R | HpyOK13ORFYP (99% identity) | GTNNAC | HpyJSHR31ORF5270P |
| 5290 | flagellar hook protein FlgE | |||
| 5650 | DNA gyrase subunit B GyrB | |||
| 5660 | M | M.HpyF209ORF865P (98% identity) | GTAC | M.HpyJSHR31ORF5660P |
| 5670 | R | Hpyfe57ORF3040P (98% identity) | GTAC | HpyJSHR31ORF5660P |
| 5680 | PG-modifying enzyme, HdpA | |||
| 7250 | anaerobic glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | Hpyfe75ORF3890P (87% identity) | HpyJSHR31ORF7260P | |
| 7290 | outer membrane protein | |||
| 9030 | type I restriction-modification system, M | |||
| 9040 | M | M.HpysHP34ORF6260P (99% identity) | GGCC | M.HpyJSHR31ORF9040P |
| 9050 | R | HpyOK314ORFYP (97% identity) | GGCC | HpyJSHR31ORF9040P |
| 9060 | integral membrane protein | |||
| 9350 | catalase-like protein | |||
| 9360 | R | HpyK042ORF2340P (99% identity) | ACGT | HpyJSHR31ORF9370P |
| 9370 | M | M.Hpyfe2ORF4945P (99% identity) | ACGT | M.HpyJSHR31ORF9370P |
| 9380 | type II restriction endonuclease | |||
| 9370 | cytosine-specific methyltransferase | |||
| 9380 | R | Hpyfe6ORF4730P (98% identity) | ACNGT | HpyJSHR31ORF9390P |
| 9390 | M | M.HpyAs010II (99% identity) | ACNGT | M.HpyJSHR31ORF9390P |
| 9400 | GTP-binding protein TypA | |||
| 9410 | non-functional type II restriction endonuclease | |||
| 9420 | M | M.Hpyfe39ORF4900P (98% identity) | ATTAAT | M.HpyJSHR31ORF9420P |
| 9430 | outer membrane protein | |||
| 10770 | 128 aa hypothetical protein | |||
| ??? | M | M.HpySG26VI (100% identity) | CTNAG | M.HpyJSHR31ORF10780P |
| 10800 | R | Hpyfe127ORF5625P (97% identity) | CTNAG | HpyJSHR31ORF10780P |
| 10810 | cyclic imide hydrolase | |||
| 11280 | ATP-dependent Clp protease, ATP-binding subunit | |||
| 11290 | M | M.HpyTW23IV (99% identity) | CCGG | M.HpyJSHR31ORF11290P |
| 11300 | R | HpyBT112ORF5860P (93% identity) | CCGG | HpyJSHR31ORF11290P |
| 11310 | 204 aa hypothetical protein | |||
| 11310 | 204 aa hypothetical protein | |||
| 11320 | M | M.Hpy464ORF1300P (99% identity) | TCGA | M.HpyJSHR31ORF11320P |
| 11330 | exodeoxyribonuclease VII large subunit XseA | |||
| 13320 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 13330 | M | M.Hpyfe33ORF6580P (98% identity) | GATC | M.HpyJSHR31ORF13330P |
| 13340 | HrgA like protein | |||
| 13770 | 53 aa hypothetical protein | |||
| 13780 | R | HpyOK306ORFQP (88% identity) | CCTC | HpyJSHR31ORF13790P |
| 13790 | M | M1.Hpyfe33ORF6780P (99% identity) | CCTC | M1.HpyJSHR31ORF13790P |
| 13800 | M | M2.Hpyfe92ORF7065P (98% identity) | CCTC | M2.HpyJSHR31ORF13790P |
| 13810 | integral membrane protein | |||
| 13880 | carboxyl-terminal protease Prc | |||
| ??? | RM | Hpyfe60ORF7000P (94% identity) | HpyJSHR31ORF13890P | |
| 13910 | nicotinate-nucleotide pyrophosphorylase NadC | |||
| 14890 | 296 aa hypothetical protein | |||
| 14900 | M | M.HpySG32ORF7665P (99% identity) | M.HpyJSHR31ORF14900P | |
| 14910 | type II restriction endonuclease | |||
| 14900 | DNA cytosine methyltransferase | |||
| 14910 | R | Hpyfe123ORF7635P (98% identity) | TGCA | HpyJSHR31ORF14920P |
| 14920 | M | M.Hpy30VI (100% identity) | TGCA | M.HpyJSHR31ORF14920P |
| 14930 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 60 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyTW17ORF7220P (97% identity) | M.HpyJSHR31ORF70P | |
| 90 | R | HpyT029ORF7135P (97% identity) | HpyJSHR31ORF70P | |
| 100 | type IIG restriction enzyme R and M protein | |||
| 1220 | biotin synthase BioB | |||
| 1230 | R | HpyOki128ORF7000P (97% identity) | HpyJSHR31ORF1240P | |
| 1240 | M | M.HpyK117ORF6660P (24% identity) | M.HpyJSHR31ORF1240AP | |
| 1250 | M | M.HpyK005ORF6630P (69% identity) | M.HpyJSHR31ORF1240BP | |
| 1260 | 86 aa hypothetical protein | |||
| 14010 | OmpR family DNA-binding response regulator | |||
| 14020 | M | M.HpyTW21ORF195P (32% identity) | M.HpyJSHR31ORF14020AP | |
| 14030 | M | M.Hpyfe15ORF6875P (66% identity) | M.HpyJSHR31ORF14020BP | |
| 14040 | R | Hpy256ORFXP (96% identity) | HpyJSHR31ORF14020P | |
| 14050 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5730 | glutamine synthetase GlnA | |||
| 5750 | R | HpyCHN8GmrSDP (54% identity) | HpyJSHR31GmrSDP | |
| 5760 | 50S ribosomal protein L9 RplI | |||
| 6880 | sel1 repeat family protein | |||
| 6890 | R | HpyTW18GmrSD2P (96% identity) | HpyJSHR31GmrSD2P | |
| 6900 | modulator of drug activity | |||