Helicobacter pylori JSHR 3 |
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Putative Helicobacter pylori JSHR 3 RM systems
Ref: Yokota,K. et al. Helicobacter e12874 (2022)
REBASE ref # 34238
Complete sequence: 1,624,837 bp
GenBank #: AP023344
REBASE acronym: HpyJSHR3
Org_num: 57362
All begin JSHR3_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6110 | polyphosphate kinase Ppk | |||
| 6120 | S | S.HpyU201ORF2120P (98% identity) | CAGNNNNNTTA | S.HpyJSHR3ORF6130P |
| 6130 | M | M.HpyOK305ORFSP (98% identity) | CAGNNNNNTTA | M.HpyJSHR3ORF6130P |
| 6140 | R | HpyPU007XVIIP (92% identity) | CAGNNNNNTTA | HpyJSHR3ORF6130P |
| 6150 | PH domain-containing protein | |||
| 10510 | hydroxyethylthiazole kinase ThiM | |||
| 10520 | R | HpyMKM1ORF853P (97% identity) | CTANNNNNNNNTGT | HpyJSHR3ORF10540P |
| 10530 | S | S.HpyP29ORFSP (95% identity) | CTANNNNNNNNTGT | S.HpyJSHR3ORF10540P |
| 10540 | M | M.HpyM26CORFNP (95% identity) | CTANNNNNNNNTGT | M.HpyJSHR3ORF10540P |
| 10550 | cytosine-specific methyltransferase | |||
| 15640 | metal-dependent hydrolase | |||
| 15650 | R | Hpy67ORF1459P (97% identity) | HpyJSHR3ORF15660P | |
| 15660 | M | M.HpyJA112VII (97% identity) | M.HpyJSHR3ORF15660P | |
| 15670 | S | S.HpyV008ORF7200P (91% identity) | S.HpyJSHR3ORF15660P | |
| 15680 | FAD-dependent thymidylate synthase ThyX | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 110 | 713 aa hypothetical protein | |||
| 120 | RM | Hpyfe106ORF50P (54% identity) | HpyJSHR3ORF120AP | |
| 130 | RM | Hpyfe2ORF55P (33% identity) | HpyJSHR3ORF120BP | |
| 140 | 172 aa hypothetical protein | |||
| 280 | outer membrane protein | |||
| 290 | R | HpyF210ORF1451P (50% identity) | CCATC | HpyJSHR3ORF310BP |
| 300 | R | HpyOK305ORFJAP (85% identity) | CCATC | HpyJSHR3ORF310AP |
| ??? | M | M2.HpySG04III (100% identity) | CCATC | M1.HpyJSHR3ORF310P |
| 330 | M | M2.Hpyfe71ORF135P (100% identity) | CCATC | M2.HpyJSHR3ORF310P |
| 340 | permease | |||
| 600 | restriction endonuclease | |||
| 610 | R | Hpyfe110ORF290P (95% identity) | HpyJSHR3ORF620P | |
| 620 | M | M.Hpy78ORF1441P (99% identity) | M.HpyJSHR3ORF620P | |
| 630 | S | S.HpySP104ORF7270P (21% identity) | S1.HpyJSHR3ORF620P | |
| 640 | S | S.Hpyfe8ORF7160P (26% identity) | S2.HpyJSHR3ORF620P | |
| 650 | S | S2.HpyGU82AORFVP (51% identity) | S3.HpyJSHR3ORF620P | |
| 660 | DNA polymerase I PolA | |||
| 1930 | nicotinate-nucleotide pyrophosphorylase NadC | |||
| 1940 | RM | Hpyfe123ORF7075P (66% identity) | HpyJSHR3ORF1940P | |
| 1950 | 288 aa hypothetical protein | |||
| 1960 | DNA methyltransferase | |||
| 1970 | M | M.HpyTN2ORF12800P (100% identity) | GANTC | M.HpyJSHR3ORF1970P |
| ??? | R | HpyTN2ORF12800P (99% identity) | GANTC | HpyJSHR3ORF1970P |
| 1990 | carboxyl-terminal protease Prc | |||
| 2060 | integral membrane protein | |||
| 2070 | M | M1.HpyF209ORF60P (99% identity) | CCTC | M.HpyJSHR3ORF2070P |
| 2080 | cytosine specific DNA methyltransferase | |||
| 2920 | alpha-1,2-fucosyltransferase | |||
| 2930 | M | M.Hpy5ORF2380P (99% identity) | GATC | M.HpyJSHR3ORF2930P |
| 2940 | R | HpyP96ORFIP (100% identity) | GATC | HpyJSHR3ORF2930P |
| 2950 | malonyl CoA-acyl carrier protein transacylase | |||
| 3500 | elongation factor P EfP | |||
| 3510 | R | R1.Hpy55ORF207P (99% identity) | R1.HpyJSHR3ORF3510P | |
| 3520 | R | R2.HpyTN2ORF2420P (99% identity) | R2.HpyJSHR3ORF3510P | |
| 3530 | pseudoaminic acid synthase NeuB | |||
| 4350 | exodeoxyribonuclease VII large subunit XseA | |||
| 4360 | M | M.Hpy898ORF1605P (97% identity) | TCGA | M.HpyJSHR3ORF4360P |
| 4370 | 204 aa hypothetical protein | |||
| 4370 | 204 aa hypothetical protein | |||
| 4380 | R | Hpy828ORF1425P (91% identity) | CCGG | HpyJSHR3ORF4390P |
| ??? | M | M.HpyM6CORFAP (98% identity) | CCGG | M.HpyJSHR3ORF4390P |
| 4420 | ATP-dependent Clp protease, ATP-binding subunit | |||
| 4890 | cyclic imide hydrolase | |||
| 4900 | R | HpyJ016VP (100% identity) | CTNAG | HpyJSHR3ORF4910P |
| 4910 | M | M.HpyJ016V (100% identity) | CTNAG | M.HpyJSHR3ORF4910P |
| 4920 | 128 aa hypothetical protein | |||
| 6280 | outer membrane protein | |||
| 6290 | M | M.HpyTN2ORF5190P (99% identity) | ATTAAT | M.HpyJSHR3ORF6290P |
| 6300 | non-functional type II restriction endonuclease | |||
| 6310 | GTP-binding protein TypA | |||
| ??? | M | M.HpyTN2ORF5220P (100% identity) | ACNGT | M.HpyJSHR3ORF6320P |
| 6340 | R | HpyTN2ORF5220P (100% identity) | ACNGT | HpyJSHR3ORF6320P |
| 6350 | catalase-like protein | |||
| 6530 | DNA gyrase subunit B GyrB | |||
| 6540 | M | M.HpyTN2ORF9340P (100% identity) | GTAC | M.HpyJSHR3ORF6540P |
| 6550 | R | Hpy4125ORFXP (91% identity) | GTAC | HpyJSHR3ORF6540P |
| 6560 | PG-modifying enzyme, HdpA | |||
| 8610 | 133 aa hypothetical protein | |||
| 8620 | R | HpyOK305ORFOP (99% identity) | GGNNCC | HpyJSHR3ORF8630P |
| 8630 | M | M.HpyTN2ORF7450P (100% identity) | GGNNCC | M.HpyJSHR3ORF8630P |
| 8640 | 3-5 exonuclease | |||
| 8800 | outer membrane protein | |||
| 8810 | RM | HpyTW22ORF3320P (57% identity) | HpyJSHR3ORF8810P | |
| 8820 | 358 aa hypothetical protein | |||
| 10540 | type I restriction-modification system, M | |||
| 10550 | M | M.Hpyfe85ORF2990P (100% identity) | GGCC | M.HpyJSHR3ORF10550P |
| 10560 | R | HpyGU1CORFNP (78% identity) | GGCC | HpyJSHR3ORF10550P |
| 10570 | integral membrane protein | |||
| 11070 | flagellar hook protein FlgE | |||
| 11080 | R | HpyGU82AORFIP (100% identity) | HpyJSHR3ORF11090P | |
| 11090 | M | M.HpySG08XIII (93% identity) | M.HpyJSHR3ORF11090P | |
| 11100 | DNA helicase | |||
| 12420 | biotin carboxylase AccC | |||
| 12430 | M | M.HpyP98ORFEP (100% identity) | TCNNGA | M.HpyJSHR3ORF12430P |
| 12440 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | HpyJSHR3ORF12430P |
| 12450 | Laminin subunit alpha-2 | |||
| 12750 | flagellar protein FlgN | |||
| 12760 | M | M.Hpy78ORF1106P (99% identity) | GCGC | M.HpyJSHR3ORF12760P |
| 12770 | flgM protein | |||
| 13590 | haloacid dehalogenase | |||
| 13600 | M | M.HpyTN2ORF1370P (99% identity) | CATG | M.HpyJSHR3ORF13600P |
| 13610 | R | HpyOK108ORFAP (100% identity) | CATG | HpyJSHR3ORF13600P |
| 13620 | serine O-acetyltransferase CysE | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 60 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpy52ORF1422P (96% identity) | M.HpyJSHR3ORF70P | |
| ??? | R | HpyTN2ORF14590P (98% identity) | HpyJSHR3ORF70P | |
| 110 | 713 aa hypothetical protein | |||
| 1320 | biotin synthase BioB | |||
| 1330 | R | Hpy35ORF21558P (87% identity) | HpyJSHR3ORF1340P | |
| 1340 | M | M.HpyTN2ORF13410P (99% identity) | M.HpyJSHR3ORF1340P | |
| 1350 | 110 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6610 | glutamine synthetase GlnA | |||
| 6630 | R | HpyJ029GmrSDP (62% identity) | HpyJSHR3GmrSDP | |
| 6640 | 50S ribosomal protein L9 RplI | |||
| 7790 | 68 aa hypothetical protein | |||
| 7800 | R | HpyGU82AGmrSD3P (100% identity) | HpyJSHR3GmrSD2AP | |
| 7810 | R | HpyF227GmrSDP (21% identity) | HpyJSHR3GmrSD2BP | |
| 7820 | modulator of drug activity | |||