Escherichia coli Rb-3 |
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Putative Escherichia coli Rb-3 RM systems
Ref: Matsumoto,Y. and Sugita,T. unpublished
REBASE ref # 34126
| Sequence length: | GenBank #: | |
| Chromosome: | 5,043,924 bp | AP025675 |
| plasmid pRb3: | 66,920 bp | AP025676 |
REBASE acronym: EcoRb3
Org_num: 56961
All begin TRECRb3_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6580 | transposase | |||
| 6590 | M | M.Mmo48659ORF2735P (100% identity) | M.EcoRb3ORF6590P | |
| 6600 | anticodon nuclease | |||
| 6610 | S | S.Mmo48659ORF2735P (100% identity) | S.EcoRb3ORF6590P | |
| 6620 | R | EcoW004ORF12170P (100% identity) | EcoRb3ORF6590P | |
| 6630 | 72 aa hypothetical protein | |||
| 38730 | 543 aa hypothetical protein | |||
| 38740 | R | EcosLF82ORF3455P (100% identity) | GGANNNNNNNNATGC | EcoRb3ORF38750P |
| 38750 | M | M.EcoPnTigI (98% identity) | GGANNNNNNNNATGC | M.EcoRb3ORF38750P |
| 38760 | S | S.EcosA32I (100% identity) | GGANNNNNNNNATGC | S.EcoRb3ORF38750P |
| 38770 | toxic peptide regulated by antisense sRNA symR | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3380 | cell division protein DamX | |||
| ??? | M | M.SspPIBDamP (100% identity) | GATC | M.EcoRb3DamP |
| 3400 | D-ribulose-5-phosphate 3-epimerase | |||
| 19000 | HD superfamily phosphohydrolase | |||
| 19010 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoRb3DcmP |
| 19020 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoRb3DcmP |
| 19030 | amino acid exporter for phenylalanine | |||
| 38210 | phage holin protein | |||
| 38220 | M | M.Ecoi127aORF3990P (100% identity) | M.EcoRb3ORF38220P | |
| 38230 | 67 aa hypothetical protein | |||
| 38300 | repressor | |||
| 38310 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoRb3ORF38310P |
| 38320 | 162 aa hypothetical protein | |||
| 39050 | N-acetylneuraminic acid mutarotase | |||
| 39060 | R | Ecoi127aORF4076P (100% identity) | EcoRb3ORF39060P | |
| 39070 | 59 aa hypothetical protein | |||
| 39670 | membrane protein | |||
| 39680 | M | M.EcosS3ORF15775P (100% identity) | M.EcoRb3ORF39680P | |
| 39690 | R | EcosS3ORF15775P (100% identity) | EcoRb3ORF39680P | |
| 39700 | 555 aa hypothetical protein | |||
| plasmid pRb3 | ||||
| 46260 | 308 aa hypothetical protein | |||
| 46270 | M | M.Sfl7ORF23565P (100% identity) | M.EcoRb3ORF46270P | |
| 46280 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 38770 | toxic peptide regulated by antisense sRNA symR | |||
| 38780 | R | EcoPnTigGmrSD2P (95% identity) | EcoRb3GmrSDP | |
| 38790 | 306 aa hypothetical protein | |||