Escherichia coli EC14 |
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Putative Escherichia coli EC14 RM systems
Ref: Ruan,Z. unpublished
REBASE ref # 31265
| Sequence length: | GenBank #: | |
| Chromosome: | 4,826,519 bp | CP060924 |
| plasmid pEC14-2: | 159,110 bp | CP060925 |
REBASE acronym: EcoEC14
Org_num: 56787
All begin H9201_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19635 | restriction endonuclease | |||
| 19640 | M | M.EmaC12ORF11130P (100% identity) | CGAYNNNNNNNTTC | M.EcoEC14ORF19640P |
| 19645 | S | S.EcosEC21ORF19195P (100% identity) | CGAYNNNNNNNTTC | S.EcoEC14ORF19640P |
| 19650 | R | EcosEC21ORF19195P (100% identity) | CGAYNNNNNNNTTC | EcoEC14ORF19640P |
| 19655 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1855 | cell division protein DamX | |||
| 1860 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoEC14DamP |
| 1865 | ribulose-phosphate 3-epimerase | |||
| 3990 | DUF3780 and DUF4357 domain-containing protein | |||
| 3995 | M | M.PmiCZP44ORF11275P (100% identity) | M.EcoEC14ORF3995P | |
| 4000 | DEAD/DEAH box helicase family protein | |||
| 9185 | HD domain-containing protein | |||
| 9190 | M | M.Ecoppa8DcmP (100% identity) | CCWGG | M.EcoEC14DcmP |
| 9195 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.EcoEC14DcmP |
| 9200 | drug/metabolite exporter YedA | |||
| 16155 | 63 aa hypothetical protein | |||
| 16160 | M | M.EcosE1ORFAP (100% identity) | M.EcoEC14ORF16160P | |
| 16165 | TrmB family transcriptional regulator | |||
| 17555 | 150 aa hypothetical protein | |||
| 17560 | R | Sso8033ORF3755P (100% identity) | CCWGG | EcoEC14ORF17565P |
| 17565 | M | M.SflSTLE1ORF5615P (100% identity) | M.EcoEC14ORF17565P | |
| 17570 | 257 aa hypothetical protein | |||
| 17720 | phage lysis protein EssD | |||
| 17725 | M | M.EcoA28ORF19950P (100% identity) | M.EcoEC14ORF17725P | |
| 17730 | 67 aa hypothetical protein | |||
| 19950 | McrC family protein | |||
| 19955 | R | EcosEC21ORF19520P (86% identity) | EcoEC14ORF19970P | |
| 19960 | IS1 family transposase | |||
| 19965 | IS5 family transposase | |||
| 19970 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoEC14ORF19970P |
| 19975 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M2.EcoEC14ORF19970P |
| 19980 | IS21-like element ISEc12 family transposase | |||
| plasmid pEC14-2 | ||||
| 23415 | IS1 family transposase | |||
| 23420 | M | M.SflLIN11ORF24665P (100% identity) | CCWGG | M.EcoEC14ORF23420P |
| 23425 | R | YpsR1ORFAP (100% identity) | CCWGG | EcoEC14ORF23420P |
| 23430 | EAL domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4000 | DEAD/DEAH box helicase family protein | |||
| 4005 | R | PmiCZP44MrrP (100% identity) | EcoEC14MrrP | |
| 4010 | transposase | |||
| 19630 | BrnT family toxin | |||
| 19635 | R | EcosEC21MrrP (100% identity) | EcoEC14Mrr2P | |
| 19640 | type I restriction-modification system subunit | |||
| 19940 | glycosyltransferase family 2 protein | |||
| 19945 | R | EcosS3McrBP (100% identity) | EcoEC14McrBP | |
| 19950 | R | EcosS9McrCP (100% identity) | EcoEC14McrCP | |
| 19955 | Alw26I/Eco31I/Esp3I family type II restriction | |||