Escherichia coli EC20 |
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Putative Escherichia coli EC20 RM systems
Ref: Ruan,Z. unpublished
REBASE ref # 31265
| Sequence length: | GenBank #: | |
| Chromosome: | 4,854,815 bp | CP060902 |
| plasmid pEC20-2: | 88,680 bp | CP060903 |
| plasmid pEC20-3: | 86,975 bp | CP060904 |
REBASE acronym: EcosEC20
Org_num: 56791
All begin H9205_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5705 | IS1 family transposase | |||
| 5710 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcosEC20ORF5720P |
| 5715 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcosEC20ORF5720P |
| 5720 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcosEC20ORF5720P |
| 5725 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2555 | DUF2556 family protein | |||
| 2560 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcosEC20ORF2560P |
| 2565 | DNA-binding transcriptional regulator Fis | |||
| 9385 | phosphohydrolase | |||
| 9390 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcosEC20DcmP |
| 9395 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcosEC20DcmP |
| 9400 | drug/metabolite exporter YedA | |||
| 16890 | 63 aa hypothetical protein | |||
| 16895 | M | M.EcosEC24ORF16890P (100% identity) | M.EcosEC20ORF16895P | |
| 16900 | TrmB family transcriptional regulator | |||
| plasmid pEC20-2 | ||||
| 23675 | 73 aa hypothetical protein | |||
| 23680 | M | M.KpnVA569ORF28145P (100% identity) | M.EcosEC20ORF23680P | |
| 23685 | 102 aa hypothetical protein | |||
| plasmid pEC20-3 | ||||
| 23925 | 103 aa hypothetical protein | |||
| 23930 | M | M.Ssp14523ORF22990P (100% identity) | M.EcosEC20ORF23930P | |
| 23935 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13415 | isocitrate dehydrogenase | |||
| 13420 | R | EcosEC27McrCP (100% identity) | EcosEC20McrCP | |
| 13425 | R | EcoteDMcrBP (100% identity) | EcosEC20McrBP | |
| 13430 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14970 | replication endonuclease | |||
| 14975 | M | M.Sen663ORF16605P (100% identity) | GATC | M.EcosEC20ORF14975P |
| 14980 | TraR/DksA family transcriptional regulator | |||