Escherichia coli EC24 |
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Putative Escherichia coli EC24 RM systems
Ref: Ruan,Z. unpublished
REBASE ref # 31265
| Sequence length: | GenBank #: | |
| Chromosome: | 4,854,815 bp | CP060885 |
| plasmid pEC24-2: | 88,670 bp | CP060886 |
| plasmid pEC24-3: | 86,975 bp | CP060887 |
REBASE acronym: EcosEC24
Org_num: 56794
All begin H9208_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5705 | IS1 family transposase | |||
| 5710 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcosEC24ORF5720P |
| 5715 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcosEC24ORF5720P |
| 5720 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcosEC24ORF5720P |
| 5725 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1930 | cell division protein DamX | |||
| 1935 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcosEC24DamP |
| 1940 | ribulose-phosphate 3-epimerase | |||
| 9385 | phosphohydrolase | |||
| 9390 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcosEC24DcmP |
| 9395 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcosEC24DcmP |
| 9400 | drug/metabolite exporter YedA | |||
| 16885 | 63 aa hypothetical protein | |||
| 16890 | M | M.EcosEC20ORF16895P (100% identity) | M.EcosEC24ORF16890P | |
| 16895 | TrmB family transcriptional regulator | |||
| plasmid pEC24-2 | ||||
| 23675 | 73 aa hypothetical protein | |||
| 23680 | M | M.KpnVA569ORF28145P (100% identity) | M.EcosEC24ORF23680P | |
| 23685 | 102 aa hypothetical protein | |||
| plasmid pEC24-3 | ||||
| 23925 | 103 aa hypothetical protein | |||
| 23930 | M | M.Ssp14523ORF22990P (100% identity) | M.EcosEC24ORF23930P | |
| 23935 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13415 | isocitrate dehydrogenase | |||
| 13420 | R | EcosEC27McrCP (100% identity) | EcosEC24McrCP | |
| 13425 | R | EcoteDMcrBP (100% identity) | EcosEC24McrBP | |
| 13430 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14970 | replication endonuclease | |||
| 14975 | M | M.Sen663ORF16605P (100% identity) | GATC | M.EcosEC24ORF14975P |
| 14980 | TraR/DksA family transcriptional regulator | |||