Escherichia coli KKo009 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli KKo009 RM systems
Ref: Gomi,R. unpublished
REBASE ref # 32053
| Sequence length: | GenBank #: | |
| Chromosome: | 4,846,819 bp | CP091673 |
| plasmid pKKo009_2: | 89,404 bp | CP091675 |
REBASE acronym: EcoKo009
Org_num: 56615
All begin L6L68_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3265 | endoribonuclease SymE | |||
| 3270 | R | Ecos641ORF3050P (100% identity) | GATANNNNNNTAG | EcoKo009ORF3280P |
| 3275 | S | S.Ecos641ORF3050P (100% identity) | GATANNNNNNTAG | S.EcoKo009ORF3280P |
| 3280 | M | M.Ecos641ORF3050P (100% identity) | GATANNNNNNTAG | M.EcoKo009ORF3280P |
| 3285 | restriction endonuclease | |||
| 19250 | AAA family ATPase | |||
| 19255 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoKo009ORF19260P |
| 19260 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoKo009ORF19260P |
| 19265 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | EcoKo009ORF19260P |
| 19270 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3085 | peptidase | |||
| 3090 | R | SflFF17ORF19275P (100% identity) | EcoKo009ORF3090P | |
| 3095 | HNH endonuclease | |||
| 3520 | PerC family transcriptional regulator | |||
| 3525 | M | M.EcoF1053ORF37690P (100% identity) | GATC | M.EcoKo009ORF3525P |
| 3530 | LexA family transcriptional regulator | |||
| 20915 | DNA-binding transcriptional regulator Fis | |||
| 20920 | M | M.EcosS1ORF18905P (100% identity) | ATGCAT | M.EcoKo009ORF20920P |
| 20925 | DUF2556 family protein | |||
| 21515 | ribulose-phosphate 3-epimerase | |||
| 21520 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoKo009DamP |
| 21525 | cell division protein DamX | |||
| plasmid pKKo009_2 | ||||
| 24900 | 103 aa hypothetical protein | |||
| 24905 | M | M.Ssp14523ORF22990P (100% identity) | M.EcoKo009ORF24905P | |
| 24910 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3280 | type I restriction-modification system subunit | |||
| 3285 | R | EfeE4C07MrrP (100% identity) | EcoKo009MrrP | |
| 3290 | BrnT family toxin | |||