Shigella flexneri SWHIN_101 |
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Putative Shigella flexneri SWHIN_101 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
Complete sequence: 4,969,852 bp
GenBank #: CP055113
REBASE acronym: SflN101
Org_num: 55454
All begin HUZ81_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 11665 | 322 aa hypothetical protein | |||
| 11670 | R | SflFF3ORF20380P (100% identity) | CCANNNNNNNNNTTGG | SflN101ORF11675P |
| 11675 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.SflN101ORF11675P |
| 11680 | S | S.SflFF3ORF20380P (100% identity) | CCANNNNNNNNNTTGG | S.SflN101ORF11675P |
| 11685 | endoribonuclease SymE | |||
| 11890 | 128 aa hypothetical protein | |||
| 11895 | M | M.Ecos154ORF4614P (100% identity) | TGANNNNNNTCCA | M.SflN101ORF11895P |
| 11900 | S | S.Ecos154ORF4614P (100% identity) | TGANNNNNNTCCA | S.SflN101ORF11895P |
| 11905 | 428 aa hypothetical protein | |||
| 12730 | AAA family ATPase | |||
| 12735 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.SflN101ORF12740P |
| 12740 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.SflN101ORF12740P |
| 12745 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | SflN101ORF12740P |
| 12750 | transposase | |||
| 19070 | extracellular solute-binding protein | |||
| 19075 | M | M.EcoPSUO78ORF15880P (99% identity) | GAACNNNNNTGC | M.SflN101ORF19075P |
| 19080 | S | S.Sen6640ORF2690P (100% identity) | GAACNNNNNTGC | S.SflN101ORF19075P |
| 19085 | transposase domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1110 | phosphohydrolase | |||
| 1115 | M | M.SsoSE61DcmP (100% identity) | CCWGG | M.SflN101DcmP |
| 1120 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.SflN101DcmP |
| 1125 | drug/metabolite exporter YedA | |||
| 11405 | LexA family transcriptional regulator | |||
| 11410 | M | M.SensSZL38ORF10620P (100% identity) | GATC | M.SflN101ORF11410P |
| 11415 | PerC family transcriptional regulator | |||
| 11870 | HNH endonuclease | |||
| 11875 | R | SflFF3ORF20580P (100% identity) | SflN101ORF11875P | |
| 11880 | AAA family ATPase | |||
| 16875 | cell division protein DamX | |||
| 16880 | M | M.UbaC1152DamP (100% identity) | GATC | M.SflN101DamP |
| 16885 | ribulose-phosphate 3-epimerase | |||
| 17405 | DUF2556 family protein | |||
| 17410 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.SflN101ORF17410P |
| 17415 | DNA-binding transcriptional regulator Fis | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11685 | endoribonuclease SymE | |||
| ??? | R | SflFF3GmrSP (100% identity) | SflN101GmrSP | |
| 11695 | DUF1127 domain-containing protein | |||
| 11875 | HNH endonuclease | |||
| 11880 | R | SflFF71McrBP (100% identity) | SflN101McrBP | |
| 11885 | R | SflFF3McrCP (100% identity) | SflN101McrCP | |
| 11890 | 128 aa hypothetical protein | |||