Shigella flexneri SWHIN_104 |
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Putative Shigella flexneri SWHIN_104 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
Complete sequence: 4,785,356 bp
GenBank #: CP055109
REBASE acronym: SflN104
Org_num: 55455
All begin HUZ82_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 19580 | 322 aa hypothetical protein | |||
| 19585 | R | SflN107ORF19785P (100% identity) | SflN104ORF19590P | |
| 19590 | M | M.SspS13ORF3945P (100% identity) | M.SflN104ORF19590P | |
| 19595 | S | S.SflN107ORF19785P (100% identity) | S.SflN104ORF19590P | |
| 19600 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1620 | cell division protein DamX | |||
| 1625 | M | M.UbaC1152DamP (100% identity) | GATC | M.SflN104DamP |
| 1630 | ribulose-phosphate 3-epimerase | |||
| 2245 | DUF2556 family protein | |||
| 2250 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.SflN104ORF2250P |
| 2255 | DNA-binding transcriptional regulator Fis | |||
| 8850 | HD domain-containing protein | |||
| 8855 | M | M.SflN107DcmP (100% identity) | CCWGG | M.SflN104DcmP |
| 8860 | V | V.SflN107DcmP (100% identity) | V.SflN104DcmP | |
| 8865 | drug/metabolite exporter YedA | |||
| 17765 | phage holin, lambda family | |||
| 17770 | M | M.SflN107ORF17955P (100% identity) | M.SflN104ORF17770P | |
| 17775 | 67 aa hypothetical protein | |||
| 17800 | LexA family transcriptional regulator | |||
| 17805 | M | M.SflN107ORF17990P (100% identity) | GATC | M.SflN104ORF17805P |
| 17810 | PerC family transcriptional regulator | |||
| 19780 | sialate O-acetylesterase | |||
| 19785 | R | SflN107ORF19980P (100% identity) | SflN104ORF19785P | |
| 19790 | IS1 family transposase | |||
| 19800 | integrase arm-type DNA-binding domain-containing | |||
| 19805 | V | V.SflN107ORF20020P (100% identity) | V.SflN104ORF19825P | |
| 19810 | 192 aa hypothetical protein | |||
| 19815 | DEAD/DEAH box helicase family protein | |||
| 19820 | ATP-binding protein | |||
| 19825 | M | M.SflN107ORF20020P (100% identity) | M.SflN104ORF19825P | |
| 19830 | R | SflN107ORF20020P (100% identity) | SflN104ORF19825P | |
| 19835 | 296 aa hypothetical protein | |||
| 20040 | conjugal transfer protein TraG N-terminal | |||
| 20045 | R | SflN107ORF20240P (100% identity) | SflN104ORF20045P | |
| 20050 | cell surface composition regulator GlgS | |||