Escherichia coli SWHEFF_58 |
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Putative Escherichia coli SWHEFF_58 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
| Sequence length: | GenBank #: | |
| Chromosome: | 4,986,748 bp | CP055048 |
| plasmid unnamed1: | 129,277 bp | CP055049 |
| plasmid unnamed3: | 4,285 bp | CP055051 |
REBASE acronym: EcoFF58
Org_num: 55391
All begin HUZ70_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11500 | adenine/cytosine-specific restriction | |||
| 11505 | R | Ecos15955ORF12100P (100% identity) | RTCANNNNNNNCTTC | EcoFF58ORF11510P |
| 11510 | M | M.Ecos15955ORF12100P (100% identity) | RTCANNNNNNNCTTC | M.EcoFF58ORF11510P |
| 11515 | S | S.Ecos15955ORF12100P (100% identity) | RTCANNNNNNNCTTC | S.EcoFF58ORF11510P |
| 11520 | endoribonuclease SymE | |||
| 11890 | 184 aa hypothetical protein | |||
| 11895 | R | Ecos53ORF20340P (100% identity) | ACYNNNNNNGTTC | EcoFF58ORF11905P |
| 11900 | S | S.Ecos53ORF20340P (100% identity) | ACYNNNNNNGTTC | S.EcoFF58ORF11905P |
| 11905 | M | M.SenS0935ORF770P (99% identity) | ACYNNNNNNGTTC | M.EcoFF58ORF11905P |
| 11910 | type II toxin-antitoxin system RelB/DinJ family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 860 | phosphohydrolase | |||
| 865 | M | M.Ecos53DcmP (100% identity) | CCWGG | M.EcoFF58DcmP |
| 870 | V | V.Ecos53DcmP (100% identity) | V.EcoFF58DcmP | |
| 875 | drug/metabolite exporter YedA | |||
| 16720 | cell division protein DamX | |||
| 16725 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoFF58DamP |
| 16730 | ribulose-phosphate 3-epimerase | |||
| 17255 | DUF2556 family protein | |||
| 17260 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.EcoFF58ORF17260P |
| 17265 | DNA-binding transcriptional regulator Fis | |||
| plasmid unnamed1 | ||||
| 23845 | relaxase/mobilization nuclease domain-containing | |||
| 23850 | RM | Eco36C07ORF24370P (99% identity) | EcoFF58ORF23850P | |
| ??? | S | S.Eco36C07ORF24370P (100% identity) | S.EcoFF58ORF23850P | |
| 23865 | conjugal transfer protein TrbC | |||
| plasmid unnamed3 | ||||
| 24470 | Rop family plasmid primer RNA-binding protein | |||
| 24475 | M | M.Efe33C07ORF24365P (100% identity) | M.EcoFF58ORF24475P | |
| 24465 | R | Efe33C07ORF24365P (100% identity) | EcoFF58ORF24475P | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11495 | GTPase | |||
| 11500 | R | Ssp28760MrrP (100% identity) | EcoFF58MrrP | |
| 11505 | type I restriction-modification system | |||