Shigella flexneri STIN_87 |
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Putative Shigella flexneri STIN_87 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
| Sequence length: | GenBank #: | |
| Chromosome: | 4,795,122 bp | CP054992 |
| plasmid unnamed3: | 80,448 bp | CP054995 |
REBASE acronym: SflFF87
Org_num: 55447
All begin HUZ57_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3225 | IS1 family transposase | |||
| 3230 | M | M.Eco20E4C04ORF3555P (99% identity) | M.SflFF87ORF3230P | |
| 3235 | AAA family ATPase | |||
| 3240 | S | S.EcoDEC7DORF520P (100% identity) | S.SflFF87ORF3230P | |
| 3245 | R | EcoDEC7DORF520P (100% identity) | SflFF87ORF3230P | |
| 3250 | 72 aa hypothetical protein | |||
| 19755 | DUF4942 domain-containing protein | |||
| 19760 | M | M.SflN110ORF19045P (100% identity) | CCANNNNNNNNTGAA | M.SflFF87ORF19760P |
| ??? | S | S.SflN110ORF19045P (100% identity) | CCANNNNNNNNTGAA | S.SflFF87ORF19760P |
| 19775 | R | SflN110ORF19045P (100% identity) | CCANNNNNNNNTGAA | SflFF87ORF19760P |
| 19780 | 52 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1605 | cell division protein DamX | |||
| 1610 | M | M.UbaC1152DamP (100% identity) | GATC | M.SflFF87DamP |
| 1615 | ribulose-phosphate 3-epimerase | |||
| 2220 | DUF2556 family protein | |||
| 2225 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.SflFF87ORF2225P |
| 2230 | DNA-binding transcriptional regulator Fis | |||
| 8535 | 140 aa hypothetical protein | |||
| 8540 | M | M.EcoPM7ORF21570P (71% identity) | GATC | M.SflFF87ORF8540P |
| 8545 | NinE family protein | |||
| 8965 | phosphohydrolase | |||
| 8970 | M | M.SflN92DcmP (100% identity) | CCWGG | M.SflFF87DcmP |
| 8975 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.SflFF87DcmP |
| 8980 | drug/metabolite exporter YedA | |||
| 9255 | 55 aa hypothetical protein | |||
| 9260 | M | M.EcosEC26ORF9315P (100% identity) | GATC | M.SflFF87ORF9260P |
| 9265 | 57 aa hypothetical protein | |||
| 11205 | DUF977 family protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.SflFF87ORF11210P | |
| 11215 | IS66-like element ISEc22 family transposase | |||
| 17820 | phage lysis protein EssD | |||
| 17825 | M | M.Sso63633ORF22290P (100% identity) | M.SflFF87ORF17825P | |
| 17830 | 67 aa hypothetical protein | |||
| 17865 | LexA family transcriptional regulator | |||
| 17870 | M | M.EcoC289ORF17960P (100% identity) | GATC | M.SflFF87ORF17870P |
| 17875 | PerC family transcriptional regulator | |||
| 19735 | HNH endonuclease | |||
| 19740 | R | SflSTLE4ORF19250P (100% identity) | SflFF87ORF19740P | |
| 19745 | McrC family protein | |||
| 20145 | sigma 54-interacting transcriptional regulator | |||
| 20150 | R | EcosEC26ORF20370P (100% identity) | SflFF87ORF20150P | |
| 20155 | IS21-like element IS100 family transposase | |||
| plasmid unnamed3 | ||||
| 24295 | IS1 family transposase | |||
| 24300 | M | M.SflSTLE4ORF22820P (100% identity) | CCWGG | M.SflFF87ORF24300P |
| 24305 | R | Ssp3CORF24390P (100% identity) | CCWGG | SflFF87ORF24300P |
| 24310 | IS6-like element IS26 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19740 | HNH endonuclease | |||
| 19745 | R | SflSTLE4McrCP (100% identity) | SflFF87McrCP | |
| 19750 | R | SflSTLE4McrBP (100% identity) | SflFF87McrBP | |
| 19755 | DUF4942 domain-containing protein | |||