Escherichia coli DH5a |
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Putative Escherichia coli DH5a RM systems
Ref: Lawrence,D. et al. Gut Microbes 14 (1), 2029673 (2022)
REBASE ref # 33508
Complete sequence: 4,586,346 bp
GenBank #: CP076470
REBASE acronym: EcosDH5a
Org_num: 54373
All begin KN807_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 10615 | cell division protein DamX | |||
| 10620 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcosDH5aDamP |
| 10625 | ribulose-phosphate 3-epimerase | |||
| 11240 | DUF2556 family protein | |||
| 11245 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.EcosDH5aORF11245P |
| 11250 | DNA-binding transcriptional regulator Fis | |||
| 17705 | phosphohydrolase | |||
| 17710 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcosDH5aDcmP |
| 17715 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcosDH5aDcmP |
| 17720 | drug/metabolite exporter YedA | |||
| 21660 | DUF1317 domain-containing protein | |||
| 21665 | M | M.SenHNK130ORF1185P (100% identity) | GATC | M.EcosDH5aORF21665P |
| 21670 | DUF4060 family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5685 | GTPase | |||
| 5690 | R | SenHNK130MrrP (100% identity) | EcosDH5aMrrP | |
| 5695 | type I restriction-modification system | |||
| 5710 | endoribonuclease SymE | |||
| 5715 | R | SenHNK130McrBP (100% identity) | EcosDH5aMcrBP | |
| 5720 | R | SenHNK130McrCP (100% identity) | EcosDH5aMcrCP | |
| 5725 | 978 aa hypothetical protein | |||
| 22200 | NADP-dependent isocitrate dehydrogenase | |||
| 22205 | R | SsoSE61ORF22640P (100% identity) | YCGR | EcosDH5aORF22205P |
| 22210 | site-specific DNA recombinase | |||