Helicobacter pylori K262 |
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Putative Helicobacter pylori K262 RM systems
Ref: Tissera,K. et al. J Microbiol (2021) In press
REBASE ref # 33453
Complete sequence: 1,645,008 bp
GenBank #: CP091772
REBASE acronym: HpyK262
Org_num: 54102
All begin L6504_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3160 | RNA degradosome polyphosphate kinase | |||
| 3170 | S | S.HpyGH9ORF2140P (97% identity) | GACNNNNNTG | S.HpyK262ORF3175P |
| 3175 | M | M.HpyU424ORF2150P (96% identity) | GACNNNNNTG | M.HpyK262ORF3175P |
| 3180 | R | HpyC80ORFGP (65% identity) | GACNNNNNTG | HpyK262ORF3175BP |
| 3185 | R | HpyU106ORF4040P (20% identity) | GACNNNNNTG | HpyK262ORF3175AP |
| 3190 | motility associated factor glycosyltransferase | |||
| 5070 | hydroxyethylthiazole kinase | |||
| 5075 | R | HpyU415ORF4030P (97% identity) | HpyK262ORF5085P | |
| 5080 | S | S.HpySP10ORF3660P (97% identity) | S.HpyK262ORF5085P | |
| 5085 | M | M.HpyGM4X (94% identity) | M.HpyK262ORF5085P | |
| 5090 | phosphatase PAP2 family protein | |||
| 7705 | M48 family metallopeptidase | |||
| 7710 | R | HpyME06ORF7385P (93% identity) | HpyK262ORF7715P | |
| 7715 | M | M.HpyU115IV (97% identity) | M.HpyK262ORF7715P | |
| 7720 | S | S.HpySP709XIII (37% identity) | S1.HpyK262ORF7715P | |
| 7725 | S | S.HpyU434VI (45% identity) | S2.HpyK262ORF7715P | |
| 7730 | 61 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 95 aa hypothetical protein | |||
| 55 | RM | HpyAL5XVII (80% identity) | AGGAG | HpyK262ORF55P |
| 60 | 176 aa hypothetical protein | |||
| 145 | outer membrane protein | |||
| 150 | R | HpySP205IIIP (97% identity) | CCATC | HpyK262ORF155P |
| 155 | M | M1.HpyU411IV (92% identity) | CCATC | M1.HpyK262ORF155P |
| 160 | M | M2.HpyU303III (99% identity) | CCATC | M2.HpyK262ORF155P |
| 165 | LptF/LptG family permease | |||
| 290 | ComF family protein | |||
| 295 | RM | HpySP210ORF6915P (97% identity) | HpyK262ORF295P | |
| 300 | S | S.Hpyfe3ORF295P (91% identity) | S.HpyK262ORF295P | |
| 305 | DNA polymerase I | |||
| 580 | UDP-N-acetylmuramate dehydrogenase | |||
| 585 | R | HpyC124VIIP (100% identity) | GAATTC | HpyK262ORF590P |
| 590 | M | M.HpyU403IX (100% identity) | GAATTC | M.HpyK262ORF590P |
| 595 | glycosyltransferase family 8 protein | |||
| 735 | site-specific DNA-methyltransferase | |||
| 740 | M | M2.HpyCOL108VII (99% identity) | GAAGA | M1.HpyK262ORF740P |
| 745 | M | M1.HpyU427VI (99% identity) | GAAGA | M2.HpyK262ORF740P |
| ??? | R | HpyAL1IIIP (98% identity) | GAAGA | HpyK262ORF740P |
| 760 | copper response regulator transcription factor | |||
| 1280 | agmatine/peptidylarginine deiminase | |||
| 1285 | M | M1.HpyCO3IV (98% identity) | CCTC | M1.HpyK262ORF1285P |
| 1290 | M | M2.HpyU403VIIP (94% identity) | M2.HpyK262ORF1285P | |
| 1295 | 87 aa hypothetical protein | |||
| 1290 | DNA cytosine methyltransferase | |||
| 1295 | R | HpyC120IXP (100% identity) | CCTTC | HpyK262ORF1300P |
| 1300 | M | M.HpyC120IX (99% identity) | CCTTC | M.HpyK262ORF1300P |
| 1305 | sodium/proline symporter PutP | |||
| 1500 | HTH domain-containing protein | |||
| 1505 | M | M.HpyBR17ORF5590P (97% identity) | GATC | M.HpyK262ORF1505P |
| 1510 | alpha-1,2-fucosyltransferase | |||
| 1890 | elongation factor P | |||
| ??? | M | M.HpySP402ORF875P (100% identity) | M.HpyK262ORF1895P | |
| 1900 | R | R1.HpyGM4ORF855P (97% identity) | R1.HpyK262ORF1895P | |
| 1905 | R | R2.HpyCOL6ORF860P (96% identity) | R2.HpyK262ORF1895P | |
| 1910 | pseudaminic acid synthase | |||
| 2305 | exodeoxyribonuclease VII large subunit | |||
| 2310 | M | M.HpyNCI18II (91% identity) | TCGA | M.HpyK262ORF2310P |
| 2315 | BsaWI family type II restriction enzyme | |||
| 3255 | Hop family outer membrane protein HopJ/HopK | |||
| 3260 | M | M.HpyU427ORF2245P (96% identity) | ATTAAT | M.HpyK262ORF3260P |
| 3265 | lipopolysaccharide heptosyltransferase family | |||
| 3270 | translational GTPase TypA | |||
| 3275 | M | M.HpySP407II (98% identity) | ACNGT | M.HpyK262ORF3275P |
| 3280 | R | HpyU414IIP (99% identity) | ACNGT | HpyK262ORF3275P |
| 3285 | DNA cytosine methyltransferase | |||
| 3280 | GIY-YIG nuclease family protein | |||
| 3285 | M | M.HpyPE103ORF2230P (98% identity) | ACGT | M.HpyK262ORF3285P |
| 3290 | R | HpyC204ORF2455P (97% identity) | ACGT | HpyK262ORF3285P |
| 3295 | catalase | |||
| 3385 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3390 | M | M.HpyU436VIII (99% identity) | GTAC | M.HpyK262ORF3390P |
| 3395 | R | HpySP07XP (98% identity) | GTAC | HpyK262ORF3390P |
| 3400 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4205 | (Fe-S)-binding protein | |||
| 4210 | RM | HpyCR1ORF3290P (90% identity) | HpyK262ORF4210P | |
| 4215 | outer membrane protein | |||
| 4295 | 3-5 exonuclease | |||
| 4300 | M | M.HpyJA110IV (99% identity) | CCNNGG | M.HpyK262ORF4300P |
| 4305 | R | HpyU420IVP (98% identity) | CCNNGG | HpyK262ORF4300P |
| 4310 | acetone carboxylase subunit gamma | |||
| 4780 | outer membrane beta-barrel protein HofF | |||
| 4785 | R | HpySP703ORF2760P (100% identity) | GCSGC | HpyK262ORF4790P |
| 4790 | M | M.HpyCO8ORF3755P (99% identity) | M.HpyK262ORF4790P | |
| 4795 | cadmium-translocating P-type ATPase | |||
| 5365 | flagellar hook protein FlgE | |||
| 5370 | R | HpyGH9XIIP (97% identity) | GTNNAC | HpyK262ORF5375P |
| 5375 | M | M.HpyGH9XII (98% identity) | GTNNAC | M.HpyK262ORF5375P |
| 5380 | ATP-dependent helicase | |||
| 6165 | acetyl-CoA carboxylase biotin carboxylase | |||
| 6170 | M | M.HpyU429XII (98% identity) | TCNNGA | M.HpyK262ORF6170P |
| 6175 | R | Hpy908ORF1078P (100% identity) | TCNNGA | HpyK262ORF6170P |
| 6180 | Laminin subunit alpha-2 precursor | |||
| 6375 | 144 aa hypothetical protein | |||
| 6380 | M | M.HpyU406XIII (99% identity) | GCGC | M.HpyK262ORF6380P |
| 6385 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6830 | HAD family hydrolase | |||
| 6835 | M | M.HpySP317I (99% identity) | CATG | M.HpyK262ORF6835P |
| 6840 | IceA2 protein | |||
| 7545 | S41 family peptidase | |||
| 7550 | R | HpyCOL3VIIIP (96% identity) | GANTC | HpyK262ORF7555P |
| 7555 | M | M.HpyME43V (99% identity) | GANTC | M.HpyK262ORF7555P |
| 7560 | N-6 DNA methylase | |||
| 7555 | site-specific DNA-methyltransferase | |||
| 7560 | RM | Hpy13345ORF1463P (93% identity) | HpyK262ORF7560P | |
| 7565 | carboxylating nicotinate-nucleotide | |||
| 7615 | copper response regulator transcription factor | |||
| 7620 | R | HpyU429XIIIP (100% identity) | TGCA | HpyK262ORF7625P |
| 7625 | M | M.HpyU429XIII (99% identity) | TGCA | M.HpyK262ORF7625P |
| 7630 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.Hpy9310ORFOP (97% identity) | GACY | M.HpyK262ORF40P |
| 45 | R | HpyI010ORF7175P (93% identity) | GACY | HpyK262ORF40P |
| 50 | 95 aa hypothetical protein | |||
| 655 | biotin synthase | |||
| 660 | R | HpyBR23ORF7445P (95% identity) | HpyK262ORF665P | |
| 665 | M | M.HpyBR22ORF7415P (94% identity) | M.HpyK262ORF665P | |
| 670 | DNA/RNA non-specific endonuclease | |||
| 720 | rod shape-determining protein MreC | |||
| 725 | R | HpyU429ORF7530P (96% identity) | HpyK262ORF730P | |
| ??? | M | M.HpyU417ORF7300P (96% identity) | M.HpyK262ORF730P | |
| 740 | site-specific DNA-methyltransferase | |||