Helicobacter pylori K154 |
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Putative Helicobacter pylori K154 RM systems
Ref: Tissera,K. et al. J Microbiol (2021) In press
REBASE ref # 33453
Complete sequence: 1,581,270 bp
GenBank #: CP091771
REBASE acronym: HpyK154
Org_num: 54101
All begin L6502_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3195 | RNA degradosome polyphosphate kinase | |||
| 3205 | S | S.HpyJA110ORF2220P (96% identity) | CAGNNNNNTG | S.HpyK154ORF3210P |
| 3210 | M | M.Hpy04ORFSP (97% identity) | CAGNNNNNTG | M.HpyK154ORF3210P |
| 3215 | R | HpyK010ORF2220P (94% identity) | CAGNNNNNTG | HpyK154ORF3210P |
| 3220 | motility associated factor glycosyltransferase | |||
| 4805 | outer membrane beta-barrel protein HofF | |||
| 4810 | S | S.Hpyfe22ORF4465P (97% identity) | CAANNNNNNNTTC | S.HpyK154ORF4810P |
| 4815 | cadmium-translocating P-type ATPase | |||
| 5095 | hydroxyethylthiazole kinase | |||
| 5100 | R | HpyK002XIIP (96% identity) | CTANNNNNNNNTTG | HpyK154ORF5110P |
| 5105 | S | S.Hpyfe125ORF4195P (96% identity) | CTANNNNNNNNTTG | S.HpyK154ORF5110P |
| 5110 | M | M.HpyK016V (97% identity) | CTANNNNNNNNTTG | M.HpyK154ORF5110P |
| 5115 | DNA cytosine methyltransferase | |||
| 7550 | M48 family metallopeptidase | |||
| 7555 | R | HpyK004ORF7165P (98% identity) | CRTANNNNNNNTC | HpyK154ORF7560P |
| 7560 | M | M.HpyK004ORF7165P (97% identity) | CRTANNNNNNNTC | M.HpyK154ORF7560P |
| 7565 | CAAX protease | |||
| 7570 | S | S.Hpy05ORFC1P (99% identity) | CRTANNNNNNNTC | S.HpyK154ORF7560P |
| 7575 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 713 aa hypothetical protein | |||
| 55 | RM | HpyP30ORFCP (93% identity) | HpyK154ORF55P | |
| 60 | transcription termination factor NusA | |||
| 260 | ComF family protein | |||
| 265 | RM | Hpys8ORF1000P (98% identity) | CYANNNNNNTTC | HpyK154ORF265P |
| 270 | S | S.HpyK032ORF455P (47% identity) | S1.HpyK154ORF265P | |
| 275 | S | S.Hpy12C8ORFC1P (98% identity) | S2.HpyK154ORF265P | |
| 280 | DNA polymerase I | |||
| 540 | UDP-N-acetylmuramate dehydrogenase | |||
| 545 | R | HpyK024VP (100% identity) | GAATTC | HpyK154ORF550P |
| 550 | M | M.Hpyfe77ORF545P (100% identity) | GAATTC | M.HpyK154ORF550P |
| 555 | glycosyltransferase family 8 protein | |||
| 1390 | serine O-acetyltransferase | |||
| 1395 | R | HpyOK34ORFA1P (97% identity) | CATG | HpyK154ORF1400P |
| 1400 | M | M.Hpy05ORFZP (99% identity) | CATG | M.HpyK154ORF1400P |
| 1405 | HAD family hydrolase | |||
| 1645 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1650 | M | M.Hpy271ORFQP (98% identity) | GATC | M.HpyK154ORF1650P |
| 1655 | HTH domain-containing protein | |||
| 3285 | Hop family outer membrane protein HopJ/HopK | |||
| 3290 | M | M.Hpyfe10ORF4950P (98% identity) | ATTAAT | M.HpyK154ORF3290P |
| 3295 | lipopolysaccharide heptosyltransferase family | |||
| 3300 | translational GTPase TypA | |||
| 3305 | M | M.HpyK004ORF2515P (98% identity) | ACNGT | M.HpyK154ORF3305P |
| 3310 | R | Hpyfe97ORF5110P (98% identity) | ACNGT | HpyK154ORF3305P |
| 3315 | DNA cytosine methyltransferase | |||
| 3310 | GIY-YIG nuclease family protein | |||
| 3315 | M | M.HpyK105ORF2465P (100% identity) | ACGT | M.HpyK154ORF3315P |
| 3320 | R | HpyUM065ORF7975P (99% identity) | ACGT | HpyK154ORF3315P |
| 3325 | catalase | |||
| 3405 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3410 | M | M.HpyME01III (97% identity) | GTAC | M.HpyK154ORF3410P |
| 3415 | R | HpyBS281ORF4940P (94% identity) | GTAC | HpyK154ORF3410P |
| 3420 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 5110 | type I restriction-modification system subunit | |||
| 5115 | M | M.HpysHP34ORF6260P (99% identity) | GGCC | M.HpyK154ORF5115P |
| 5120 | R | HpyJ009ORF2690P (99% identity) | GGCC | HpyK154ORF5115P |
| 5125 | phosphatase PAP2 family protein | |||
| 5370 | flagellar hook protein FlgE | |||
| 5375 | R | HpyU431IXP (97% identity) | GTNNAC | HpyK154ORF5380P |
| 5380 | M | M.HpyK014IX (98% identity) | GTNNAC | M.HpyK154ORF5380P |
| 5385 | ATP-dependent helicase | |||
| 6015 | acetyl-CoA carboxylase biotin carboxylase | |||
| 6020 | M | M.HpyU203XII (99% identity) | TCNNGA | M.HpyK154ORF6020P |
| 6025 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | HpyK154ORF6020P |
| 6030 | Laminin subunit alpha-2 precursor | |||
| 6200 | 144 aa hypothetical protein | |||
| 6205 | M | M.HpyK105XIII (99% identity) | GCGC | M.HpyK154ORF6205P |
| 6210 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6810 | sodium/proline symporter PutP | |||
| 6815 | M | M.HpyOK34ORFJP (97% identity) | CCTTC | M.HpyK154ORF6815P |
| ??? | R | HpyK105ORF375P (98% identity) | CCTTC | HpyK154ORF6815P |
| 6830 | restriction endonuclease | |||
| 6825 | iron permease | |||
| 6830 | R | Hpyfe32ORF6935P (100% identity) | GTSAC | HpyK154ORF6835P |
| 6835 | M | M.HpySP315XI (100% identity) | GTSAC | M.HpyK154ORF6835P |
| 6840 | HNH endonuclease | |||
| 6835 | site-specific DNA-methyltransferase | |||
| 6840 | R | HpyK004XIIP (98% identity) | CCTC | HpyK154ORF6845P |
| 6845 | M | M2.HpyC61XIIP (99% identity) | CCTC | M1.HpyK154ORF6845P |
| 6850 | M | M2.HpyK93ORF6985P (99% identity) | CCTC | M2.HpyK154ORF6845P |
| 6855 | agmatine deiminase | |||
| 6895 | S41 family peptidase | |||
| 6900 | R | Hpy04ORFNP (97% identity) | GANTC | HpyK154ORF6905P |
| 6905 | M | M.HpyJ017VI (99% identity) | GANTC | M.HpyK154ORF6905P |
| 6910 | 356 aa hypothetical protein | |||
| 7450 | 102 aa hypothetical protein | |||
| 7455 | R | HpyK004IIIP (100% identity) | TGCA | HpyK154ORF7460P |
| 7460 | M | M.HpyK004III (100% identity) | TGCA | M.HpyK154ORF7460P |
| 7465 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpySG14ORF7090P (96% identity) | M.HpyK154ORF40P | |
| 45 | R | HpyOK88ORFFP (98% identity) | HpyK154ORF40P | |
| 50 | 713 aa hypothetical protein | |||
| 615 | type III restriction endonuclease subunit R | |||
| 620 | R | HpySG17ORF1010P (95% identity) | HpyK154ORF625P | |
| 625 | M | M.HpyK110ORF6605P (97% identity) | M.HpyK154ORF625P | |
| 630 | ABC transporter ATP-binding protein/permease | |||
| 6970 | copper response regulator transcription factor | |||
| 6975 | M | M.HpySWT06ORF390P (95% identity) | M.HpyK154ORF6975P | |
| 6980 | R | HpySG24ORF200P (90% identity) | HpyK154ORF6975P | |
| 6985 | rod shape-determining protein MreC | |||