Helicobacter pylori K115 |
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Putative Helicobacter pylori K115 RM systems
Ref: Tissera,K. et al. J Microbiol (2021) In press
REBASE ref # 33453
Complete sequence: 1,617,365 bp
GenBank #: CP091770
REBASE acronym: Hpy115
Org_num: 54100
All begin L6503_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 125 | RNA degradosome polyphosphate kinase | |||
| 135 | S | S.HpyK93ORF5110P (100% identity) | CCANNNNNNTTA | S.Hpy115ORF140P |
| 140 | M | M.HpyK93ORF5110P (100% identity) | CCANNNNNNTTA | M.Hpy115ORF140P |
| 145 | R | HpyK93ORF5110P (100% identity) | CCANNNNNNTTA | Hpy115ORF140P |
| 150 | motility associated factor glycosyltransferase | |||
| 410 | DNA cytosine methyltransferase | |||
| 415 | M | M.HpyK93ORF4835P (100% identity) | CTANNNNNNNNTGT | M.Hpy115ORF415P |
| 420 | S | S.HpyK93ORF4835P (100% identity) | CTANNNNNNNNTGT | S.Hpy115ORF415P |
| 425 | R | HpyK93ORF4835P (100% identity) | CTANNNNNNNNTGT | Hpy115ORF415P |
| 430 | hydroxyethylthiazole kinase | |||
| 5275 | FAD-dependent thymidylate synthase | |||
| 5280 | S | S.HpyPU009XIV (58% identity) | S2.Hpy115ORF5290P | |
| 5285 | S | S.HpySWT08ORF7415P (70% identity) | S1.Hpy115ORF5290P | |
| 5290 | M | M.HpyK93ORF7700P (100% identity) | M.Hpy115ORF5290P | |
| 5295 | R | HpyK93ORF7700P (99% identity) | Hpy115ORF5290P | |
| 5300 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 215 | Hop family outer membrane protein HopJ/HopK | |||
| 220 | M | M.HpyK93ORF5025P (100% identity) | ATTAAT | M.Hpy115ORF220P |
| 225 | lipopolysaccharide heptosyltransferase family | |||
| 230 | translational GTPase TypA | |||
| 235 | M | M.HpyK93ORF5010P (100% identity) | ACNGT | M.Hpy115ORF235P |
| 240 | R | Hpyfe82ORF4760P (100% identity) | ACNGT | Hpy115ORF235P |
| 245 | DNA cytosine methyltransferase | |||
| 240 | GIY-YIG nuclease family protein | |||
| 245 | M | M.HpyK93ORF5000P (100% identity) | ACGT | M.Hpy115ORF245P |
| 250 | R | HpyK93ORF5000P (100% identity) | ACGT | Hpy115ORF245P |
| 255 | catalase | |||
| 400 | phosphatase PAP2 family protein | |||
| 405 | R | HpyK93ORF4840P (100% identity) | GGCC | Hpy115ORF410P |
| 410 | M | M.HpysHP34ORF6260P (100% identity) | GGCC | M.Hpy115ORF410P |
| 415 | type I restriction-modification system subunit | |||
| 1265 | outer membrane protein | |||
| 1270 | RM | HpyK93ORF3980P (100% identity) | Hpy115ORF1270P | |
| 1275 | (Fe-S)-binding protein | |||
| 2475 | flagellar hook protein FlgE | |||
| 2480 | R | HpyK93ORF2765P (100% identity) | GTNNAC | Hpy115ORF2485P |
| 2485 | M | M.HpyK93ORF2765P (100% identity) | GTNNAC | M.Hpy115ORF2485P |
| 2490 | ATP-dependent helicase | |||
| 3165 | acetyl-CoA carboxylase biotin carboxylase | |||
| 3170 | M | M.HpyK93ORF2085P (100% identity) | TCNNGA | M.Hpy115ORF3170P |
| 3175 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | Hpy115ORF3170P |
| 3180 | Laminin subunit alpha-2 precursor | |||
| 3350 | 144 aa hypothetical protein | |||
| ??? | R | HpyK93ORF1895P (100% identity) | GCGC | Hpy115ORF3360P |
| 3360 | M | M.HpyK93ORF1895P (100% identity) | GCGC | M.Hpy115ORF3360P |
| 3365 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 3815 | HAD family hydrolase | |||
| 3820 | M | M.HpyK93ORF1435P (100% identity) | CATG | M.Hpy115ORF3820P |
| 3825 | R | HpyK93ORF1435P (100% identity) | CATG | Hpy115ORF3820P |
| 3830 | serine O-acetyltransferase | |||
| 4960 | DNA polymerase I | |||
| 4965 | S | S.HpyK93ORF295P (100% identity) | S.Hpy115ORF4970P | |
| 4970 | RM | HpyK93ORF295P (100% identity) | CYANNNNNNTTC | Hpy115ORF4970P |
| 4975 | ComF family protein | |||
| 5200 | 184 aa hypothetical protein | |||
| 5205 | RM | HpyK93ORF60P (100% identity) | Hpy115ORF5205P | |
| 5210 | 713 aa hypothetical protein | |||
| 5395 | 67 aa hypothetical protein | |||
| 5400 | M | M.HpyK93ORF7595P (100% identity) | TGCA | M.Hpy115ORF5400P |
| 5405 | R | HpyK93ORF7595P (100% identity) | TGCA | Hpy115ORF5400P |
| 5410 | 133 aa hypothetical protein | |||
| 5935 | carboxylating nicotinate-nucleotide | |||
| 5940 | M | M.HpyK93ORF7050P (100% identity) | GANTC | M.Hpy115ORF5940P |
| 5945 | R | HpyK93ORF7050P (100% identity) | GANTC | Hpy115ORF5940P |
| 5950 | 67 aa hypothetical protein | |||
| 5990 | TerC family protein | |||
| 5995 | M | M2.HpyK93ORF6985P (100% identity) | CCTC | M1.Hpy115ORF5995P |
| 6000 | M | M1.HpyK93ORF6985P (100% identity) | CCTC | M2.Hpy115ORF5995P |
| 6005 | R | HpyK93ORF6985P (100% identity) | CCTC | Hpy115ORF5995P |
| 6010 | site-specific DNA-methyltransferase | |||
| 6005 | HNH endonuclease | |||
| 6010 | M | M.HpyK93ORF6975P (100% identity) | GTSAC | M.Hpy115ORF6010P |
| 6015 | R | HpyK93ORF6975P (100% identity) | GTSAC | Hpy115ORF6010P |
| 6020 | DNA cytosine methyltransferase | |||
| 6165 | ACP S-malonyltransferase | |||
| 6175 | R | HpyK93ORF6805P (100% identity) | GATC | Hpy115ORF6180P |
| 6180 | M | M.HpyK93ORF6805P (100% identity) | GATC | M.Hpy115ORF6180P |
| 6185 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6975 | exodeoxyribonuclease VII large subunit | |||
| 6980 | M | M.Hpyfe10ORF5940P (100% identity) | TCGA | M.Hpy115ORF6980P |
| 6985 | 204 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4595 | DNA/RNA non-specific endonuclease | |||
| 4600 | M | M.HpyK93ORF660P (100% identity) | M.Hpy115ORF4600P | |
| 4605 | R | HpyK016ORF6545P (97% identity) | Hpy115ORF4600P | |
| 4610 | type III restriction endonuclease subunit R | |||
| 5210 | 713 aa hypothetical protein | |||
| 5215 | R | HpyK93ORF40P (100% identity) | Hpy115ORF5220P | |
| 5220 | M | M.HpyUM038ORF805P (98% identity) | M.Hpy115ORF5220P | |
| 5225 | ATP-dependent DNA helicase RecG | |||