Helicobacter pylori K93 |
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Putative Helicobacter pylori K93 RM systems
Ref: Tissera,K. et al. J Microbiol (2021) In press
REBASE ref # 33453
Complete sequence: 1,617,221 bp
GenBank #: CP091769
REBASE acronym: HpyK93
Org_num: 54103
All begin L6505_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4820 | hydroxyethylthiazole kinase | |||
| 4825 | R | Hpy115ORF415P (100% identity) | CTANNNNNNNNTGT | HpyK93ORF4835P |
| 4830 | S | S.Hpy115ORF415P (100% identity) | CTANNNNNNNNTGT | S.HpyK93ORF4835P |
| 4835 | M | M.Hpy115ORF415P (100% identity) | CTANNNNNNNNTGT | M.HpyK93ORF4835P |
| 4840 | DNA cytosine methyltransferase | |||
| 5095 | motility associated factor glycosyltransferase | |||
| ??? | R | Hpy115ORF140P (100% identity) | CCANNNNNNTTA | HpyK93ORF5110P |
| 5110 | M | M.Hpy115ORF140P (100% identity) | CCANNNNNNTTA | M.HpyK93ORF5110P |
| 5115 | S | S.Hpy115ORF140P (100% identity) | CCANNNNNNTTA | S.HpyK93ORF5110P |
| 5125 | RNA degradosome polyphosphate kinase | |||
| 7690 | M48 family metallopeptidase | |||
| 7695 | R | Hpy115ORF5290P (99% identity) | HpyK93ORF7700P | |
| 7700 | M | M.Hpy115ORF5290P (100% identity) | M.HpyK93ORF7700P | |
| 7705 | S | S1.Hpy115ORF5290P (96% identity) | S1.HpyK93ORF7700P | |
| 7710 | S | S2.Hpy115ORF5290P (74% identity) | S2.HpyK93ORF7700P | |
| 7715 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 713 aa hypothetical protein | |||
| 60 | RM | Hpy115ORF5205P (100% identity) | HpyK93ORF60P | |
| 65 | 184 aa hypothetical protein | |||
| 290 | ComF family protein | |||
| 295 | RM | Hpy115ORF4970P (100% identity) | CYANNNNNNTTC | HpyK93ORF295P |
| 300 | S | S.Hpy115ORF4970P (100% identity) | S.HpyK93ORF295P | |
| 305 | DNA polymerase I | |||
| 1425 | serine O-acetyltransferase | |||
| 1430 | R | Hpy115ORF3820P (100% identity) | CATG | HpyK93ORF1435P |
| 1435 | M | M.Hpy115ORF3820P (100% identity) | CATG | M.HpyK93ORF1435P |
| 1440 | HAD family hydrolase | |||
| 1890 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1895 | M | M.Hpy115ORF3360P (100% identity) | GCGC | M.HpyK93ORF1895P |
| ??? | R | Hpy115ORF3360P (100% identity) | GCGC | HpyK93ORF1895P |
| 1905 | 144 aa hypothetical protein | |||
| 2075 | Laminin subunit alpha-2 precursor | |||
| 2080 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | HpyK93ORF2085P |
| 2085 | M | M.Hpy115ORF3170P (100% identity) | TCNNGA | M.HpyK93ORF2085P |
| 2090 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2760 | ATP-dependent helicase | |||
| 2765 | M | M.Hpy115ORF2485P (100% identity) | GTNNAC | M.HpyK93ORF2765P |
| 2770 | R | Hpy115ORF2485P (100% identity) | GTNNAC | HpyK93ORF2765P |
| 2775 | flagellar hook protein FlgE | |||
| 3975 | (Fe-S)-binding protein | |||
| 3980 | RM | Hpy115ORF1270P (100% identity) | HpyK93ORF3980P | |
| 3985 | outer membrane protein | |||
| 4835 | type I restriction-modification system subunit | |||
| 4840 | M | M.HpysHP34ORF6260P (100% identity) | GGCC | M.HpyK93ORF4840P |
| 4845 | R | HpyK046ORF2435P (100% identity) | GGCC | HpyK93ORF4840P |
| 4850 | phosphatase PAP2 family protein | |||
| 4990 | catalase | |||
| 4995 | R | Hpy115ORF245P (100% identity) | ACGT | HpyK93ORF5000P |
| 5000 | M | M.Hpy115ORF245P (100% identity) | ACGT | M.HpyK93ORF5000P |
| 5005 | GIY-YIG nuclease family protein | |||
| 5000 | DNA cytosine methyltransferase | |||
| 5005 | R | Hpyfe82ORF4760P (100% identity) | ACNGT | HpyK93ORF5010P |
| 5010 | M | M.Hpy115ORF235P (100% identity) | ACNGT | M.HpyK93ORF5010P |
| 5015 | translational GTPase TypA | |||
| 5020 | lipopolysaccharide heptosyltransferase family | |||
| 5025 | M | M.Hpy115ORF220P (100% identity) | ATTAAT | M.HpyK93ORF5025P |
| 5030 | Hop family outer membrane protein HopJ/HopK | |||
| 5995 | 204 aa hypothetical protein | |||
| 6000 | M | M.Hpyfe10ORF5940P (100% identity) | TCGA | M.HpyK93ORF6000P |
| 6005 | exodeoxyribonuclease VII large subunit | |||
| 6800 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6805 | M | M.Hpy115ORF6180P (100% identity) | GATC | M.HpyK93ORF6805P |
| 6810 | R | Hpy115ORF6180P (100% identity) | GATC | HpyK93ORF6805P |
| 6820 | ACP S-malonyltransferase | |||
| 6965 | DNA cytosine methyltransferase | |||
| 6970 | R | Hpy115ORF6010P (100% identity) | GTSAC | HpyK93ORF6975P |
| 6975 | M | M.Hpy115ORF6010P (100% identity) | GTSAC | M.HpyK93ORF6975P |
| 6980 | HNH endonuclease | |||
| 6975 | site-specific DNA-methyltransferase | |||
| 6980 | R | Hpy115ORF5995P (100% identity) | CCTC | HpyK93ORF6985P |
| 6985 | M | M2.Hpy115ORF5995P (100% identity) | CCTC | M1.HpyK93ORF6985P |
| 6990 | M | M1.HpyK004XII (100% identity) | CCTC | M2.HpyK93ORF6985P |
| 6995 | agmatine deiminase | |||
| 7040 | 59 aa hypothetical protein | |||
| 7045 | R | Hpy115ORF5940P (100% identity) | GANTC | HpyK93ORF7050P |
| 7050 | M | M.Hpy115ORF5940P (100% identity) | GANTC | M.HpyK93ORF7050P |
| 7055 | carboxylating nicotinate-nucleotide | |||
| 7585 | 133 aa hypothetical protein | |||
| 7590 | R | Hpy115ORF5400P (100% identity) | TGCA | HpyK93ORF7595P |
| 7595 | M | M.HpyK037IV (100% identity) | TGCA | M.HpyK93ORF7595P |
| 7600 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyK022ORF7075P (97% identity) | M.HpyK93ORF40P | |
| 50 | R | Hpy115ORF5220P (100% identity) | HpyK93ORF40P | |
| 55 | 713 aa hypothetical protein | |||
| 650 | type III restriction endonuclease subunit R | |||
| 655 | R | Hpy115ORF4600P (97% identity) | HpyK93ORF660P | |
| 660 | M | M.Hpy115ORF4600P (100% identity) | M.HpyK93ORF660P | |
| 665 | DNA/RNA non-specific endonuclease | |||