Helicobacter pylori AL04 |
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Putative Helicobacter pylori AL04 RM systems
Ref: Suzuki,R. et al. unpublished
REBASE ref # 33451
Complete sequence: 1,639,336 bp
GenBank #: CP058287
REBASE acronym: HpyAL04
Org_num: 54087
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | HpyAL02ORFDP (19% identity) | GCANNNNNNTAA | HpyAL04ORFHAP |
| ??? | R | HpyAL03ORFXP (67% identity) | GCANNNNNNTAA | HpyAL04ORFHBP |
| ??? | M | M.HpyAL03ORFXP (98% identity) | GCANNNNNNTAA | M.HpyAL04ORFHP |
| ??? | S | S.HpyMM01ORF2115P (98% identity) | GCANNNNNNTAA | S.HpyAL04ORFHP |
| ??? | R | HpyAL05ORFCP (98% identity) | TCTANNNNNNNTTC | HpyAL04ORFEP |
| ??? | M | M.HpyH137ORF7960P (97% identity) | TCTANNNNNNNTTC | M.HpyAL04ORFEP |
| ??? | S | S.HpyKH9ORFGP (97% identity) | TCTANNNNNNNTTC | S.HpyAL04ORFEP |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | S | S.HpyAL05ORFXP (61% identity) | S.HpyAL04ORFJP | |
| ??? | RM | Hpyfe52ORF265P (96% identity) | CYANNNNNNTTC | HpyAL04ORFJP |
| ??? | M | M1.HpyHK711ORFJP (99% identity) | CCATC | M1.HpyAL04ORFLP |
| ??? | M | M1.Hpyfe60ORF155P (99% identity) | CCATC | M2.HpyAL04ORFLP |
| ??? | R | HpyHK840ORFJP (93% identity) | CCATC | HpyAL04ORFLP |
| ??? | RM | HpyH006ORF7345P (85% identity) | HpyAL04ORFCP | |
| ??? | M | M.Hpy256ORFMP (97% identity) | GATC | M.HpyAL04ORFXP |
| ??? | M | M.HpyAL02ORFKP (100% identity) | TCGA | M.HpyAL04ORFNP |
| ??? | M | M.HpyCOL305VII (93% identity) | GTNNAC | M.HpyAL04ORFOP |
| ??? | R | HpyCA2IXP (99% identity) | GTNNAC | HpyAL04ORFOP |
| ??? | R | Hpyfe62ORF6915P (92% identity) | GATATC | HpyAL04ORFVP |
| ??? | M | M.HpyHK711ORFB1P (98% identity) | GATATC | M.HpyAL04ORFVP |
| ??? | RM | HpyAL05ORFDP (85% identity) | HpyAL04ORFDP | |
| ??? | R | HpyHK721ORFRP (92% identity) | GTAC | HpyAL04ORFPP |
| ??? | M | M.HpyAL02ORFNP (100% identity) | GTAC | M.HpyAL04ORFPP |
| ??? | R | HpyU205ORF4060P (100% identity) | ACGT | HpyAL04ORFQP |
| ??? | M | M.HpyCA1ORF4680P (94% identity) | M.HpyAL04ORFQP | |
| ??? | R | HpyT001IIP (100% identity) | ACNGT | HpyAL04ORFUP |
| ??? | M | M.HpySP207II (100% identity) | ACNGT | M.HpyAL04ORFUP |
| ??? | M | M.HpyPU001III (98% identity) | ATTAAT | M.HpyAL04ORFKP |
| ??? | M | M.Hpy117ORF5075P (99% identity) | TCNNGA | M.HpyAL04ORFSP |
| ??? | R | Hpy238ORF5250P (99% identity) | TCNNGA | HpyAL04ORFSP |
| ??? | M | M.HpyAL05ORFNP (99% identity) | GCGC | M.HpyAL04ORFTP |
| ??? | M | M.HpyHP22ORF4195P (97% identity) | CATG | M.HpyAL04ORFRP |
| ??? | R | HpyCA23IP (85% identity) | CATG | HpyAL04ORFRP |
| ??? | R | HpyAL05ORFQP (89% identity) | TGCA | HpyAL04ORFWP |
| ??? | M | M.HpyAL02ORFSP (97% identity) | TGCA | M.HpyAL04ORFWP |
| ??? | M | M2.HpyAL05ORFAP (99% identity) | M1.HpyAL04ORFBP | |
| ??? | M | M1.HpyC018IX (99% identity) | CCTC | M2.HpyAL04ORFBP |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.HpyAL03ORFEP (97% identity) | M.HpyAL04ORFFP | |
| ??? | R | HpyKG4ORF6825P (91% identity) | HpyAL04ORFFP | |
| ??? | M | M.HpyAL04ORFFP (57% identity) | M.HpyAL04ORFMAP | |
| ??? | M | M.HpyAL04ORFFP (43% identity) | M.HpyAL04ORFMBP | |
| ??? | M | M.HpyAL02ORFVP (94% identity) | M.HpyAL04ORFGP | |
| ??? | R | HpyCA1ORF6745P (93% identity) | HpyAL04ORFGP | |
| ??? | M | M.HpyCA16ORF305P (97% identity) | M.HpyAL04ORFIP | |
| ??? | R | HpyAL05ORFEP (80% identity) | HpyAL04ORFIP | |