Helicobacter pylori UBN18 |
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Putative Helicobacter pylori UBN18 RM systems
Ref: Suzuki,R. et al. unpublished
REBASE ref # 33454
Complete sequence: 1,656,897 bp
GenBank #: CP058251
REBASE acronym: HpyUBN18
Org_num: 54105
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | S | S.HpyLIM7XI (98% identity) | CACNNNNNTC | S.HpyUBN18ORFC1P |
| ??? | M | M.HpyGRE046ORF2280P (95% identity) | CACNNNNNTC | M.HpyUBN18ORFC1P |
| ??? | R | HpyGE9ORF2380P (89% identity) | CACNNNNNTC | HpyUBN18ORFC1P |
| ??? | S | S1.HpyGU82AORF17020P (90% identity) | S.HpyUBN18ORFE1P | |
| ??? | R | Hpyfe80ORF4595P (95% identity) | HpyUBN18ORFCP | |
| ??? | S | S.HpyPO07ORF2585P (92% identity) | S.HpyUBN18ORFCP | |
| ??? | M | M.Hpyfe36ORF2995P (94% identity) | M.HpyUBN18ORFCP | |
| ??? | S | S.HpyT004ORF7085P (97% identity) | S.HpyUBN18ORFGP | |
| ??? | M | M.HpyID7V (45% identity) | M.HpyUBN18ORFGBP | |
| ??? | M | M.HpyI015ORF7275P (48% identity) | M.HpyUBN18ORFGAP | |
| ??? | R | HpySG24VP (92% identity) | HpyUBN18ORFGP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M1.HpyP002IV (98% identity) | CCTC | M1.HpyUBN18ORFPP |
| ??? | M | M1.HpyS299III (98% identity) | CCTC | M2.HpyUBN18ORFPP |
| ??? | R | HpyF019IXP (91% identity) | CCTC | HpyUBN18ORFPP |
| ??? | R | Hpybs3ORFGP (95% identity) | GATC | HpyUBN18ORFA1P |
| ??? | M | M.Hpy155ORF1940P (98% identity) | GATC | M.HpyUBN18ORFA1P |
| ??? | M | M.HpyBS31ORF2055P (98% identity) | TCGA | M.HpyUBN18ORFQP |
| ??? | R | HpyBS281ORF6025P (99% identity) | CCGG | HpyUBN18ORFB1P |
| ??? | M | M.HpyI008V (99% identity) | CCGG | M.HpyUBN18ORFB1P |
| ??? | M | M.HpyLI13II (98% identity) | ATTAAT | M.HpyUBN18ORFLP |
| ??? | M | M.HpyBS06ORF5170P (99% identity) | ACNGT | M.HpyUBN18ORFXP |
| ??? | R | HpySP404IIP (97% identity) | ACNGT | HpyUBN18ORFXP |
| ??? | M | M.HpyKH21ORFGP (96% identity) | M.HpyUBN18ORFSP | |
| ??? | R | HpyCA26IXP (97% identity) | HpyUBN18ORFSP | |
| ??? | RM | HpyTW03ORF3330P (86% identity) | HpyUBN18ORFEP | |
| ??? | R | HpyJ017ORF4555P (92% identity) | GTNNAC | HpyUBN18ORFRP |
| ??? | M | M.HpyGE13X (91% identity) | GTNNAC | M.HpyUBN18ORFRP |
| ??? | M | M.HpyBGR7ORF5340P (96% identity) | TCNNGA | M.HpyUBN18ORFUP |
| ??? | R | HpyKH37ORFAP (98% identity) | TCNNGA | HpyUBN18ORFUP |
| ??? | M | M.HpyU202XV (96% identity) | M.HpyUBN18ORFVP | |
| ??? | M | M.Hpyfe93ORF1580P (98% identity) | TCNGA | M.HpyUBN18ORFNP |
| ??? | R | HpyQ35ORFUP (99% identity) | TCNGA | HpyUBN18ORFNP |
| ??? | M | M.HpyBS281ORF1590P (98% identity) | CATG | M.HpyUBN18ORFTP |
| ??? | R | HpyIn34AORFAP (87% identity) | CATG | HpyUBN18ORFTP |
| ??? | M | M.HpyBS281ORF1190P (99% identity) | GATATC | M.HpyUBN18ORFYP |
| ??? | R | HpyGE15ORF6555P (99% identity) | GATATC | HpyUBN18ORFYP |
| ??? | RM | HpySW05ORF6670P (25% identity) | HpyUBN18ORFD1P | |
| ??? | RM | HpyIN7ORF6600P (63% identity) | HpyUBN18ORFJP | |
| ??? | R | HpyQ59ORFDP (98% identity) | GAAGA | HpyUBN18ORFOP |
| ??? | M | M2.HpyTW06III (99% identity) | GAAGA | M1.HpyUBN18ORFOP |
| ??? | M | M.HpyPE11III (95% identity) | GAAGA | M2.HpyUBN18ORFOP |
| ??? | R | HpyQ35ORFA1P (99% identity) | HpyUBN18ORFWP | |
| ??? | M | M.HpyPE16ORF7030P (98% identity) | M.HpyUBN18ORFWP | |
| ??? | S | S2.HpyGE7ORF6960P (95% identity) | S2.HpyUBN18ORFKP | |
| ??? | S | S1.HpyMA19ORF6905P (96% identity) | S1.HpyUBN18ORFKP | |
| ??? | RM | HpyBS21ORF290P (98% identity) | CYANNNNNNTTC | HpyUBN18ORFKP |
| ??? | M | M1.HpyUM023ORF1405P (98% identity) | CCATC | M1.HpyUBN18ORFMP |
| ??? | M | M2.HpyFD662ORF310P (99% identity) | CCATC | M2.HpyUBN18ORFMP |
| ??? | R | HpyCOL209XVIP (97% identity) | CCATC | HpyUBN18ORFMP |
| ??? | RM | HpyIR3ORF7055P (85% identity) | HpyUBN18ORFBP | |
| ??? | M | M.HpyL003XIV (98% identity) | TGCA | M.HpyUBN18ORFZP |
| ??? | R | HpyNP11XIP (100% identity) | TGCA | HpyUBN18ORFZP |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | HpyPO08XVIIIP (95% identity) | HpyUBN18ORFDP | |
| ??? | M | M.HpyI011ORF3625P (94% identity) | M.HpyUBN18ORFDP | |
| ??? | M | M.HpyML1ORFIP (96% identity) | M.HpyUBN18ORFHP | |
| ??? | R | HpyID10ORF6535P (92% identity) | HpyUBN18ORFHP | |
| ??? | M | M.HpyBS31ORF7655P (95% identity) | M.HpyUBN18ORFIP | |
| ??? | R | HpyMA16ORF6875P (11% identity) | HpyUBN18ORFIP | |
| ??? | R | HpyH013ORF6810P (95% identity) | HpyUBN18ORFFP | |
| ??? | M | M.HpyK022ORF7075P (96% identity) | M.HpyUBN18ORFFP | |