Escherichia coli PT62 |
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Putative Escherichia coli PT62 RM systems
Ref: Lu,X. and Li,R. unpublished
REBASE ref # 33400
| Sequence length: | GenBank #: | |
| Chromosome: | 4,578,540 bp | CP090448 |
| plasmid pPT62-106kb: | 106,761 bp | CP090450 |
| plasmid pPT62-9kb: | 9,533 bp | CP090453 |
| plasmid pPT62-tetX-108kb: | 108,576 bp | CP090449 |
REBASE acronym: EcoPT62
Org_num: 53871
All begin LZ175_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3305 | IS1-like element IS1A family transposase | |||
| 3310 | R | SenceORFJP (100% identity) | CAAYNNNNNNCTGG | EcoPT62ORF3320P |
| 3315 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.EcoPT62ORF3320P |
| 3320 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.EcoPT62ORF3320P |
| 3325 | GTPase family protein | |||
| plasmid pPT62-106kb | ||||
| 23420 | IS1-like element IS1A family transposase | |||
| 23425 | R | SenceORFJP (100% identity) | CAAYNNNNNNCTGG | EcoPT62ORF3320P |
| 23430 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.EcoPT62ORF3320P |
| 23435 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.EcoPT62ORF3320P |
| 23440 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2275 | DUF2556 family protein | |||
| 2280 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoPT62ORF2280P |
| 2285 | DNA-binding transcriptional regulator Fis | |||
| 6025 | 58 aa hypothetical protein | |||
| 6030 | M | M.EcoLP51ORF6035P (100% identity) | M.EcoPT62ORF6030P | |
| 6035 | PerC family transcriptional regulator | |||
| 6080 | 67 aa hypothetical protein | |||
| 6085 | M | M.EcoLP51ORF6090P (100% identity) | M.EcoPT62ORF6085P | |
| 6090 | Pyocin large subunit | |||
| 6100 | 139 aa hypothetical protein | |||
| 6105 | M | M.EcoLP51ORF6110P (100% identity) | M.EcoPT62ORF6105P | |
| 6110 | DUF551 domain-containing protein | |||
| 9065 | HD domain-containing protein | |||
| 9070 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.EcoPT62DcmP |
| 9075 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.EcoPT62DcmP |
| 9080 | drug/metabolite exporter YedA | |||
| 17505 | phage holin, lambda family | |||
| 17510 | M | M.EcoLP51ORF17500P (100% identity) | M.EcoPT62ORF17510P | |
| 17515 | 67 aa hypothetical protein | |||
| 17540 | LexA family transcriptional regulator | |||
| 17545 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoPT62ORF17545P |
| 17550 | PerC family transcriptional regulator | |||
| 20595 | glyoxylate bypass operon transcriptional | |||
| 20600 | M | M.EcoLP51ORF20595P (100% identity) | CCWGG | M.EcoPT62ORF20600P |
| 20605 | bifunctional isocitrate dehydrogenase | |||
| plasmid pPT62-106kb | ||||
| 23255 | 73 aa hypothetical protein | |||
| 23260 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoPT62ORF23260P |
| 23265 | 103 aa hypothetical protein | |||
| plasmid pPT62-9kb | ||||
| 24040 | 137 aa hypothetical protein | |||
| 24045 | RM | EcoLP51ORF23405P (100% identity) | EcoPT62ORF24045P | |
| 24050 | mobilization protein MobX | |||
| plasmid pPT62-tetX-108kb | ||||
| 22800 | 103 aa hypothetical protein | |||
| 22805 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoPT62ORF22805P |
| 22810 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17335 | 300 aa hypothetical protein | |||
| 17340 | R | EcoLP51GmrSDP (100% identity) | EcoPT62GmrSDP | |
| 17345 | recombinase family protein | |||