Vibrio cholerae PanChol |
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Putative Vibrio cholerae PanChol RM systems
Ref: Hubbard,T.P. et al. Sci Transl Med 10 (445) (2018)
REBASE ref # 33930
| Sequence length: | GenBank #: | |
| chromosome 1: | 2,994,890 bp | CP090399 |
| chromosome 2: | 1,045,928 bp | CP090400 |
REBASE acronym: VchPC1
Org_num: 55999
All begin LZM82_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 5435 | 687 aa hypothetical protein | |||
| 5440 | M | M.VspNIH41ORF1746P (100% identity) | AAGNNNNNNCATC | M.VchPC1ORF5440P |
| 5445 | S | S.VspNIH41ORF1746P (99% identity) | AAGNNNNNNCATC | S.VchPC1ORF5440P |
| 5450 | DUF262 domain-containing protein | |||
| 5455 | DUF262 domain-containing protein | |||
| 5460 | R | VspNIH41ORF1746P (100% identity) | AAGNNNNNNCATC | VchPC1ORF5440P |
| 5465 | anti-phage defense ZorAB system protein ZorA | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1300 | AAA family ATPase | |||
| 1305 | M | M.VspNIH41DamP (100% identity) | GATC | M.VchPC1DamP |
| 1310 | ribulose-phosphate 3-epimerase | |||
| chromosome 2 | ||||
| 17550 | 141 aa hypothetical protein | |||
| 17555 | M | M.VspNIH41ORF3529P (94% identity) | M.VchPC1ORF17555P | |
| 17560 | type II toxin-antitoxin system Phd/YefM family | |||
| 18630 | DUF3696 domain-containing protein | |||
| 18635 | R | VchsMO10ORF14720P (100% identity) | RCCGGY | VchPC1ORF18640P |
| 18640 | M | M.VspNIH41ORF700P (100% identity) | RCCGGY | M.VchPC1ORF18640P |
| 18645 | GMP reductase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 9795 | class I SAM-dependent methyltransferase | |||
| 9800 | R | VchsMO10ORF9915P (100% identity) | VchPC1ORF9800P | |
| 9805 | NERD domain-containing protein | |||