Escherichia coli E-T654 |
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Putative Escherichia coli E-T654 RM systems
Ref: Chen,J. et al. unpublished
REBASE ref #
| Sequence length: | GenBank #: | |
| Chromosome: | 4,695,064 bp | CP090289 |
| Chromosome: | 4,704,697 bp | CP090293 |
REBASE acronym:
Org_num:
All begin LZT31_, LZT41_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13825 | GTPase family protein | |||
| 13830 | M | M.SflN97ORF14060P (100% identity) | M.EcoET654ORF13830P | |
| 13835 | S | S.SflN97ORF14060P (100% identity) | S.EcoET654ORF13830P | |
| 13840 | R | SflN97ORF14060P (99% identity) | EcoET654ORF13830P | |
| 13845 | IS1-like element IS1B family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 445 | 8-oxoguanine DNA glycosylase | |||
| ??? | M | M.EcoR14ORF16875P (100% identity) | M.EcoT654ORF450P | |
| 455 | dNTP triphosphohydrolase | |||
| 2515 | DUF2556 family protein | |||
| 2520 | M | M.EcoH6ORF3290P (100% identity) | ATGCAT | M.EcoT654ORF2520P |
| 2525 | DNA-binding transcriptional regulator Fis | |||
| 9055 | phosphohydrolase | |||
| 9060 | M | M.Ecoi648DcmP (100% identity) | CCWGG | M.EcoT654DcmP |
| 9065 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoT654DcmP |
| 9070 | drug/metabolite exporter YedA | |||
| 14815 | replication endonuclease | |||
| 14820 | M | M.EcoW26ORF33470P (100% identity) | GATC | M.EcoT654ORF14820P |
| 14825 | TraR/DksA family transcriptional regulator | |||
| 19480 | 126 aa hypothetical protein | |||
| 19485 | M | M.EcoSBF45ORF4935P (100% identity) | M.EcoT654ORF19485P | |
| 19490 | R | R1.EcoSBF45ORF4935P (100% identity) | R1.EcoT654ORF19485P | |
| 19495 | R | R2.EcoSBF45ORF4935P (100% identity) | R2.EcoT654ORF19485P | |
| 19500 | relaxase | |||
| Chromosome | ||||
| 2355 | cell division protein DamX | |||
| 2360 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoET654DamP |
| 2365 | ribulose-phosphate 3-epimerase | |||
| 2915 | DUF2556 family protein | |||
| 2920 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoET654ORF2920P |
| 2925 | DNA-binding transcriptional regulator Fis | |||
| 9265 | 150 aa hypothetical protein | |||
| 9270 | M | M.Ecow264ORF8950P (100% identity) | GATC | M.EcoET654ORF9270P |
| 9275 | 63 aa hypothetical protein | |||
| 9360 | phosphohydrolase | |||
| 9365 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoET654DcmP |
| 9370 | V | V.SflSTLE1DcmP (100% identity) | V.EcoET654DcmP | |
| 9375 | drug/metabolite exporter YedA | |||
| 20400 | IS4-like element ISVsa5 family transposase | |||
| 20405 | R | SflFF24DptFP (100% identity) | EcoET654DptFP | |
| 20410 | integrase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13970 | IS5 family transposase | |||
| 13975 | R | SflN97McrCP (100% identity) | EcoET654McrCP | |
| 13980 | R | SflN97McrBP (100% identity) | EcoET654McrBP | |
| 13985 | zinc-ribbon domain-containing protein | |||
| 18230 | DinI family protein | |||
| 18235 | R | Eco4012GmrSDP (100% identity) | EcoET654GmrSDP | |
| 18240 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15115 | replication endonuclease | |||
| 15120 | M | M.Sen663ORF16605P (100% identity) | GATC | M.EcoET654ORF15120P |
| 15125 | TraR/DksA family transcriptional regulator | |||