Escherichia coli E305-2 |
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Putative Escherichia coli E305-2 RM systems
Ref: Chen,J. et al. unpublished
REBASE ref # 33373
| Sequence length: | GenBank #: | |
| Chromosome: | 5,106,286 bp | CP090254 |
| plasmid pE305-2-IMP-4: | 49,457 bp | CP090255 |
| plasmid punnamed3: | 90,981 bp | CP090250 |
REBASE acronym: Eco3052
Org_num: 53751
All begin LZT36_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11080 | IS3 family transposase | |||
| 11085 | M | M.Ecos142ORF9685P (100% identity) | M.Eco3052ORF11085P | |
| 11090 | S | S1.SmaQC11ORF51970P (63% identity) | S1.Eco3052ORF11085P | |
| 11095 | IS5-like element ISKpn26 family transposase | |||
| 11100 | S | S.Ecos142ORF9685P (69% identity) | S2.Eco3052ORF11085P | |
| 11105 | YecA family protein | |||
| 11110 | cold shock domain-containing protein | |||
| 11115 | R | Ecos142ORF9685P (100% identity) | Eco3052ORF11085P | |
| 11120 | M48 family metallopeptidase | |||
| 21960 | adenine/cytosine-specific restriction | |||
| 21965 | R | Ecoo241ORF21620P (100% identity) | AACNNNNNNGTGC | Eco3052ORF21970P |
| 21970 | M | M.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | M.Eco3052ORF21970P |
| 21975 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.Eco3052ORF21970P |
| 21980 | endoribonuclease SymE | |||
| 22415 | 184 aa hypothetical protein | |||
| 22420 | R | Ecos53ORF20340P (100% identity) | ACYNNNNNNGTTC | Eco3052ORF22430P |
| 22425 | S | S.Ecos53ORF20340P (100% identity) | ACYNNNNNNGTTC | S.Eco3052ORF22430P |
| 22430 | M | M.SenS0935ORF770P (99% identity) | ACYNNNNNNGTTC | M.Eco3052ORF22430P |
| 22435 | type II toxin-antitoxin system RelB/DinJ family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3100 | cell division protein DamX | |||
| 3105 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco3052DamP |
| 3110 | ribulose-phosphate 3-epimerase | |||
| 3640 | DUF2556 family protein | |||
| 3645 | M | M.Ecos142ORF2405P (100% identity) | ATGCAT | M.Eco3052ORF3645P |
| 3650 | DNA-binding transcriptional regulator Fis | |||
| 7555 | DUF1382 family protein | |||
| 7560 | M | M.SspPIBORF6330P (100% identity) | GATC | M.Eco3052ORF7560P |
| 7565 | PerC family transcriptional regulator | |||
| 10820 | phosphohydrolase | |||
| 10825 | M | M.Ecos142DcmP (100% identity) | CCWGG | M.Eco3052DcmP |
| 10830 | V | V.Ecos142DcmP (100% identity) | V.Eco3052DcmP | |
| 10835 | drug/metabolite exporter YedA | |||
| 14270 | DUF3927 family protein | |||
| 14285 | M | M.SsoL4094ORF17545P (100% identity) | A | M.Eco3052ORF14285P |
| 14290 | TrmB family transcriptional regulator | |||
| 16790 | replication endonuclease | |||
| 16795 | M | M.SspS13ORF8710P (100% identity) | GATC | M.Eco3052ORF16795P |
| 16800 | TraR/DksA family transcriptional regulator | |||
| 21700 | LexA family transcriptional regulator | |||
| 21705 | M | M.SflN101ORF11410P (100% identity) | GATC | M.Eco3052ORF21705P |
| 21710 | PerC family transcriptional regulator | |||
| 23810 | LexA family transcriptional regulator | |||
| 23815 | M | M.SflN101ORF11410P (100% identity) | GATC | M.Eco3052ORF23815P |
| 23820 | PerC family transcriptional regulator | |||
| plasmid pE305-2-IMP-4 | ||||
| 26000 | EAL domain-containing protein | |||
| 26005 | R | YpsR1ORFAP (100% identity) | CCWGG | Eco3052ORF26010P |
| 26010 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.Eco3052ORF26010P |
| 26015 | IS1 family transposase | |||
| plasmid punnamed3 | ||||
| 80 | 101 aa hypothetical protein | |||
| 85 | M | M.SsoST152ORF25555P (100% identity) | M.Eco3052ORF85P | |
| 90 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21955 | GTPase | |||
| 21960 | R | Ssp28760MrrP (100% identity) | Eco3052MrrP | |
| 21965 | type I restriction-modification system | |||
| 21980 | endoribonuclease SymE | |||
| 21985 | R | SenHNK130McrBP (100% identity) | Eco3052McrBP | |
| 21990 | R | SenHNK130McrCP (64% identity) | Eco3052McrCP | |
| 21995 | IS5-like element ISKpn26 family transposase | |||