Bacteroides fragilis IHMA_4 |
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Putative Bacteroides fragilis IHMA_4 RM systems
Ref: Wallace,M.J. et al. unpublished
REBASE ref # 33200
Complete sequence: 5,540,606 bp
GenBank #: CP080295
REBASE acronym: BfrIHMA4
Org_num: 53025
All begin K0E66_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 11315 | AAA family ATPase | |||
| ??? | C | C.Bfr85BORF11685P (100% identity) | C.BfrIHMA4ORF11325P | |
| 11320 | R | Bfr85BORF11685P (100% identity) | BfrIHMA4ORF11325P | |
| 11325 | M | M.Bfr85BORF11685P (100% identity) | M.BfrIHMA4ORF11325P | |
| 11330 | DNA-binding protein | |||
| 11335 | Fic family protein | |||
| 11340 | S | S.Bfr85BORF11685P (37% identity) | S1.BfrIHMA4ORF11325P | |
| 11345 | S | S5.Bca104ORF10965P (71% identity) | S2.BfrIHMA4ORF11325P | |
| 11350 | tyrosine-type recombinase/integrase | |||
| 15795 | 66 aa hypothetical protein | |||
| 15800 | C | C.Pjo12C29ORF2943P (100% identity) | C.BfrIHMA4ORF15805P | |
| 15805 | M | M.Pjo12C29ORF2944P (100% identity) | M.BfrIHMA4ORF15805P | |
| 15810 | R | Bfr9ORF15395P (100% identity) | BfrIHMA4ORF15805P | |
| 15815 | S1 RNA-binding domain-containing protein | |||
| 20980 | 132 aa hypothetical protein | |||
| 20985 | S | S4.Pdi574ORF8250P (100% identity) | S2.BfrIHMA4ORF21005P | |
| 20990 | DUF2971 domain-containing protein | |||
| 20995 | S | S1.Bfr85BORF21690P (44% identity) | S1.BfrIHMA4ORF21005P | |
| 21000 | virulence RhuM family protein | |||
| 21005 | M | M.Bfr85BORF21690P (100% identity) | M.BfrIHMA4ORF21005P | |
| 21010 | R | Bfr85BORF21690P (100% identity) | BfrIHMA4ORF21005P | |
| 21015 | C | C.Pdi3ORF12400P (100% identity) | C.BfrIHMA4ORF21005P | |
| 21020 | antitoxin VbhA family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1660 | transposase | |||
| 1670 | RM | PmeBin96ORFBP (97% identity) | BfrIHMA4ORF1670P | |
| 1675 | helix-turn-helix domain-containing protein | |||
| 6230 | AAA family ATPase | |||
| 6235 | M | M.Bfr85BORF6490P (100% identity) | M.BfrIHMA4ORF6235P | |
| 6240 | clindamycin resistance transfer factor BtgB | |||
| 9335 | 117 aa hypothetical protein | |||
| 9340 | M | M.PmeBin13ORFDP (100% identity) | M.BfrIHMA4ORF9340P | |
| 9345 | conjugative transposon protein TraN | |||
| 9945 | DUF499 domain-containing protein | |||
| 9950 | M | M.Bfr85BORF10260P (100% identity) | M.BfrIHMA4ORF9950P | |
| 9955 | R | Bfr85BORF10260P (100% identity) | BfrIHMA4ORF9950P | |
| 9960 | helix-turn-helix transcriptional regulator | |||
| 13595 | YigZ family protein | |||
| 13600 | R | BspZJ18ORF12200P (100% identity) | BfrIHMA4ORF13600P | |
| 13605 | nitroreductase family protein | |||
| 19795 | 240 aa hypothetical protein | |||
| 19800 | M | M1.Pvu0110ORF5730P (100% identity) | M.BfrIHMA4ORF19800P | |
| 19805 | DUF5045 domain-containing protein | |||
| 19830 | 117 aa hypothetical protein | |||
| 19835 | M | M.PmeBin13ORFDP (98% identity) | M.BfrIHMA4ORF19835P | |
| 19840 | conjugative transposon protein TraN | |||
| 22790 | PcfK-like family protein | |||
| 22795 | M | M.BfrYORF2470P (100% identity) | M.BfrIHMA4ORF22795P | |
| 22800 | 124 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8875 | RNA pseudouridine synthase | |||
| 8880 | R | Bfr85BORF10025P (100% identity) | BfrIHMA4ORF8885P | |
| 8885 | M | M.Bfr85BORF10025P (99% identity) | M.BfrIHMA4ORF8885P | |
| 8890 | discoidin domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17810 | zinc ribbon domain-containing protein | |||
| 17815 | R | Bsp2737GmrSDP (100% identity) | BfrIHMA4GmrSDP | |
| 17820 | pyridoxamine 5-phosphate oxidase family | |||