Helicobacter pylori J99 derivative |
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Putative Helicobacter pylori J99 derivative RM systems
Ref: O'Brien,V.P. et al. unpublished
REBASE ref # 33452
| Sequence length: | GenBank #: | |
| Chromosome: | 1,653,204 bp | CP089284 |
| Chromosome: | 1,685,094 bp | CP089283 |
REBASE acronym:
Org_num:
All begin LUA77_, LUA78_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2745 | phosphatase PAP2 family protein | |||
| 2750 | M | M.HpyS300ORF7640P (100% identity) | M.HpyJ99bORF2750P | |
| 2755 | S | S.HpyJ99aORF995P (99% identity) | S.HpyJ99bORF2750P | |
| 2760 | R | HpyJ99aORF995P (100% identity) | HpyJ99bORF2750P | |
| 2765 | hydroxyethylthiazole kinase | |||
| 3055 | cadmium-translocating P-type ATPase | |||
| 3060 | S | S.HpyS300ORF7330P (85% identity) | S.HpyJ99bORF3060P | |
| 3065 | outer membrane beta-barrel protein HofF | |||
| 4665 | motility associated factor glycosyltransferase | |||
| 4670 | R | HpyS300ORF5690P (99% identity) | CCANNNNNNTTT | HpyJ99bORF4675P |
| 4675 | M | M.HpyU428ORF2165P (100% identity) | CCANNNNNNTTT | M.HpyJ99bORF4675P |
| 4680 | S | S.HpyU428ORF2165P (100% identity) | CCANNNNNNTTT | S.HpyJ99bORF4675P |
| 4690 | RNA degradosome polyphosphate kinase | |||
| 7170 | M48 family metallopeptidase | |||
| 7175 | R | HpyJ99aORF4490P (99% identity) | HpyJ99bORF7180P | |
| 7180 | M | M.HpyS300ORF3070P (100% identity) | M.HpyJ99bORF7180P | |
| 7185 | S | S.Hpy99XV (66% identity) | S.HpyJ99bORF7180P | |
| 7190 | cagY like domain protein | |||
| Chromosome | ||||
| 680 | outer membrane beta-barrel protein HofF | |||
| 685 | S | S.HpySP09XIV (96% identity) | AAGNNNNNNCTC | S.HpyJ99aORF685P |
| 690 | cadmium-translocating P-type ATPase | |||
| 980 | hydroxyethylthiazole kinase | |||
| 985 | R | HpyJ99bORF2750P (100% identity) | HpyJ99aORF995P | |
| 990 | S | S.HpyH015XVI (96% identity) | S.HpyJ99aORF995P | |
| 995 | M | M.HpyS300ORF7640P (100% identity) | M.HpyJ99aORF995P | |
| 1000 | phosphatase PAP2 family protein | |||
| 4480 | cagY like domain protein | |||
| 4485 | S | S.Hpy99XV (98% identity) | CTTTANNNNNNCTT | S.HpyJ99aORF4490P |
| 4490 | M | M.HpyS300ORF3070P (99% identity) | CTTTANNNNNNCTT | M.HpyJ99aORF4490P |
| 4495 | R | HpyS300ORF3070P (99% identity) | CTTTANNNNNNCTT | HpyJ99aORF4490P |
| 4500 | M48 family metallopeptidase | |||
| 6975 | RNA degradosome polyphosphate kinase | |||
| 6985 | S | S.HpyU428ORF2165P (100% identity) | CCANNNNNNTTT | S.HpyJ99aORF6990P |
| 6990 | M | M.HpyU428ORF2165P (100% identity) | CCANNNNNNTTT | M.HpyJ99aORF6990P |
| 6995 | R | HpyS300ORF5690P (99% identity) | CCANNNNNNTTT | HpyJ99aORF6990P |
| 7000 | motility associated factor glycosyltransferase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 155 | carboxylating nicotinate-nucleotide | |||
| ??? | RM | HpyJ99aORF3690P (94% identity) | GGWCNA | HpyJ99bORF160P |
| 175 | site-specific DNA-methyltransferase | |||
| 170 | DNA methyltransferase | |||
| 175 | M | M.HpyS300VII (100% identity) | GANTC | M.HpyJ99bORF175P |
| 180 | R | HpyS300VIIP (100% identity) | GANTC | HpyJ99bORF175P |
| 185 | DNA methyltransferase | |||
| 890 | IceA2 protein | |||
| 895 | M | M.HpyJ99aORF2970P (100% identity) | CATG | M.HpyJ99bORF895P |
| 900 | HAD family hydrolase | |||
| 1345 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1350 | M | M.HpyS300ORF1030P (98% identity) | GCGC | M.HpyJ99bORF1350P |
| 1355 | R | HpyU429XVIP (100% identity) | GCGC | HpyJ99bORF1350P |
| 1360 | 144 aa hypothetical protein | |||
| 1550 | Laminin subunit alpha-2 precursor | |||
| 1555 | R | HpySP202XP (100% identity) | TCNNGA | HpyJ99bORF1560P |
| 1560 | M | M.HpyS300X (100% identity) | TCNNGA | M.HpyJ99bORF1560P |
| 1565 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2435 | ATP-dependent helicase | |||
| 2440 | M | M.HpyJ99aORF1310P (100% identity) | GTNNAC | M.HpyJ99bORF2440P |
| 2445 | R | HpyS300ORF7965P (99% identity) | GTNNAC | HpyJ99bORF2440P |
| 2450 | flagellar hook protein FlgE | |||
| 2905 | ABC transporter permease subunit | |||
| 2910 | M | M.HpyS300V (100% identity) | CGWCG | M.HpyJ99bORF2910P |
| 2915 | R | HpyS300VP (100% identity) | CGWCG | HpyJ99bORF2910P |
| 2920 | osmoprotection protein | |||
| 3545 | acetone carboxylase subunit gamma | |||
| 3550 | R | HpyS300IVP (100% identity) | CCNNGG | HpyJ99bORF3555P |
| 3555 | M | M.HpyS300IV (100% identity) | CCNNGG | M.HpyJ99bORF3555P |
| 3560 | 3-5 exonuclease | |||
| 3640 | outer membrane protein | |||
| 3645 | RM | HpyJ99aORF105P (100% identity) | HpyJ99bORF3645P | |
| 3650 | (Fe-S)-binding protein | |||
| 4460 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4465 | R | HpyS300VIIIP (100% identity) | GTAC | HpyJ99bORF4470P |
| 4470 | M | M.HpyS300VIII (100% identity) | GTAC | M.HpyJ99bORF4470P |
| 4475 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4560 | catalase | |||
| 4565 | R | HpyJ99aORF7095P (100% identity) | ACGT | HpyJ99bORF4570P |
| 4570 | M | M.HpyS300ORF5795P (100% identity) | ACGT | M.HpyJ99bORF4570P |
| 4575 | GIY-YIG nuclease family protein | |||
| 4570 | DNA cytosine methyltransferase | |||
| 4575 | R | HpyS300ORF5785P (100% identity) | ACNGT | HpyJ99bORF4580P |
| 4580 | M | M.HpyS300ORF5785P (100% identity) | ACNGT | M.HpyJ99bORF4580P |
| 4585 | translational GTPase TypA | |||
| 4590 | glycosyltransferase family 9 protein | |||
| 4595 | M | M.HpyS300II (100% identity) | ATTAAT | M.HpyJ99bORF4595P |
| 4600 | Hop family outer membrane protein HopJ/HopK | |||
| 5530 | AAA family ATPase | |||
| 5535 | M | M.HpyU418II (100% identity) | CCGG | M.HpyJ99bORF5535P |
| 5540 | R | HpyJ99aORF6135P (100% identity) | CCGG | HpyJ99bORF5535P |
| 5545 | 152 aa hypothetical protein | |||
| 5545 | 152 aa hypothetical protein | |||
| 5550 | M | M.HpyS300IX (98% identity) | TCGA | M.HpyJ99bORF5550P |
| 5555 | exodeoxyribonuclease VII large subunit | |||
| 5950 | pseudaminic acid synthase | |||
| 5955 | R | R2.HpyU428ORF885P (100% identity) | R1.HpyJ99bORFAP | |
| 5960 | R | R1.HpyS300ORF4375P (100% identity) | R2.HpyJ99bORFAP | |
| ??? | M | M.HpyU428ORF885P (100% identity) | M.HpyJ99bORFAP | |
| 5965 | elongation factor P | |||
| 6350 | alpha-1,2-fucosyltransferase | |||
| 6355 | M | M.HpyS300VI (100% identity) | GATC | M.HpyJ99bORF6355P |
| 6360 | R | HpySP202VIIP (98% identity) | GATC | HpyJ99bORF6355P |
| 6370 | ACP S-malonyltransferase | |||
| 6545 | DNA cytosine methyltransferase | |||
| 6550 | R | HpyU428IXP (100% identity) | GTSAC | HpyJ99bORF6555P |
| 6555 | M | M.HpyS300ORF3730P (100% identity) | GTSAC | M.HpyJ99bORF6555P |
| 6560 | DNA cytosine methyltransferase | |||
| 7260 | 95 aa hypothetical protein | |||
| 7265 | RM | HpyJ99aORF4405P (100% identity) | HpyJ99bORF7265P | |
| 7270 | CAAX protease | |||
| 7480 | ComF family protein | |||
| 7485 | RM | HpyS300XIV (99% identity) | CYANNNNNNTGA | HpyJ99bORF7485P |
| 7490 | S | S.HpyJ99aORF4185P (100% identity) | CYANNNNNNTGA | S.HpyJ99bORF7485P |
| 7495 | DNA polymerase I | |||
| Chromosome | ||||
| 100 | (Fe-S)-binding protein | |||
| 105 | RM | HpyJ99bORF3645P (100% identity) | HpyJ99aORF105P | |
| 110 | outer membrane protein | |||
| 190 | 3-5 exonuclease | |||
| 195 | M | M.HpyS300IV (100% identity) | CCNNGG | M.HpyJ99aORF195P |
| 200 | R | HpyS300IVP (100% identity) | CCNNGG | HpyJ99aORF195P |
| 205 | acetone carboxylase subunit gamma | |||
| 825 | osmoprotection protein | |||
| 830 | R | HpyS300VP (100% identity) | CGWCG | HpyJ99aORF835P |
| 835 | M | M.HpyS300V (100% identity) | CGWCG | M.HpyJ99aORF835P |
| 840 | ABC transporter permease subunit | |||
| 1300 | flagellar hook protein FlgE | |||
| 1305 | R | HpyS300ORF7965P (100% identity) | GTNNAC | HpyJ99aORF1310P |
| 1310 | M | M.HpyJ99bORF2440P (100% identity) | GTNNAC | M.HpyJ99aORF1310P |
| 1315 | ATP-dependent helicase | |||
| 2300 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2305 | M | M.HpyS300X (100% identity) | TCNNGA | M.HpyJ99aORF2305P |
| 2310 | R | HpySP202XP (100% identity) | TCNNGA | HpyJ99aORF2305P |
| 2315 | Laminin subunit alpha-2 precursor | |||
| 2505 | 144 aa hypothetical protein | |||
| 2510 | R | HpyU429XVIP (100% identity) | GCGC | HpyJ99aORF2515P |
| 2515 | M | M.HpyS300ORF1030P (98% identity) | GCGC | M.HpyJ99aORF2515P |
| 2520 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 2965 | HAD family hydrolase | |||
| 2970 | M | M.HpyJ99bORF895P (100% identity) | CATG | M.HpyJ99aORF2970P |
| 2975 | IceA2 protein | |||
| 3670 | DNA methyltransferase | |||
| 3675 | R | HpyS300VIIP (100% identity) | GANTC | HpyJ99aORF3680P |
| 3680 | M | M.HpyS300VII (100% identity) | GANTC | M.HpyJ99aORF3680P |
| 3685 | DNA methyltransferase | |||
| 3685 | DNA methyltransferase | |||
| 3690 | RM | HpyJ99bORF160P (94% identity) | GGWTAA | HpyJ99aORF3690P |
| 3695 | carboxylating nicotinate-nucleotide | |||
| 4175 | DNA polymerase I | |||
| 4180 | S | S.HpyJ99bORF7485P (100% identity) | CYANNNNNNTGA | S.HpyJ99aORF4185P |
| 4185 | RM | HpyS300XIV (100% identity) | CYANNNNNNTGA | HpyJ99aORF4185P |
| 4190 | ComF family protein | |||
| 4400 | CAAX protease | |||
| 4405 | RM | HpyJ99bORF7265P (100% identity) | HpyJ99aORF4405P | |
| 4410 | 95 aa hypothetical protein | |||
| 5110 | DNA cytosine methyltransferase | |||
| 5115 | M | M.HpyS300ORF3730P (100% identity) | GTSAC | M.HpyJ99aORF5115P |
| 5120 | R | HpyU428IXP (100% identity) | GTSAC | HpyJ99aORF5115P |
| 5125 | DNA cytosine methyltransferase | |||
| 5300 | ACP S-malonyltransferase | |||
| 5310 | R | HpyS300VIP (100% identity) | GATC | HpyJ99aORF5315P |
| 5315 | M | M.HpyS300VI (100% identity) | GATC | M.HpyJ99aORF5315P |
| 5320 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 5710 | elongation factor P | |||
| ??? | M | M.HpyU428ORF885P (100% identity) | M.HpyJ99aORFAP | |
| 5715 | R | R1.HpyS300ORF4375P (100% identity) | R1.HpyJ99aORFAP | |
| 5720 | R | R2.HpyU428ORF885P (100% identity) | R2.HpyJ99aORFAP | |
| 5725 | pseudaminic acid synthase | |||
| 6115 | exodeoxyribonuclease VII large subunit | |||
| 6120 | M | M.HpyS300IX (98% identity) | TCGA | M.HpyJ99aORF6120P |
| 6125 | 152 aa hypothetical protein | |||
| 6125 | 152 aa hypothetical protein | |||
| 6130 | R | HpyJ99bORF5535P (100% identity) | CCGG | HpyJ99aORF6135P |
| 6135 | M | M.HpyU418II (100% identity) | CCGG | M.HpyJ99aORF6135P |
| 6140 | AAA family ATPase | |||
| 7065 | Hop family outer membrane protein HopJ/HopK | |||
| 7070 | M | M.HpyS300II (100% identity) | ATTAAT | M.HpyJ99aORF7070P |
| 7075 | glycosyltransferase family 9 protein | |||
| 7080 | translational GTPase TypA | |||
| 7085 | M | M.HpyS300ORF5785P (100% identity) | ACNGT | M.HpyJ99aORF7085P |
| 7090 | R | HpyS300ORF5785P (100% identity) | ACNGT | HpyJ99aORF7085P |
| 7095 | DNA cytosine methyltransferase | |||
| 7090 | GIY-YIG nuclease family protein | |||
| 7095 | M | M.HpyS300ORF5795P (100% identity) | ACGT | M.HpyJ99aORF7095P |
| 7100 | R | HpyJ99bORF4570P (100% identity) | ACGT | HpyJ99aORF7095P |
| 7105 | catalase | |||
| 7190 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 7195 | M | M.HpyS300VIII (100% identity) | GTAC | M.HpyJ99aORF7195P |
| 7200 | R | HpyS300VIIIP (100% identity) | GTAC | HpyJ99aORF7195P |
| 7205 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 25 | biotin synthase | |||
| 30 | R | HpyS300ORF2380P (97% identity) | HpyJ99bORF35P | |
| 35 | M | M.HpyU428ORF7410P (100% identity) | M.HpyJ99bORF35P | |
| 40 | DNA/RNA non-specific endonuclease | |||
| 90 | rod shape-determining protein MreC | |||
| 95 | R | HpyS300ORF2305P (100% identity) | HpyJ99bORF100P | |
| 100 | M | M.HpyS300ORF2305P (100% identity) | M.HpyJ99bORF100P | |
| 105 | copper response regulator transcription factor | |||
| 7245 | ATP-dependent DNA helicase RecG | |||
| 7250 | M | M.HpyS300ORF2995P (100% identity) | GWCAY | M.HpyJ99bORF7250P |
| 7255 | R | HpyJ99aORF4420P (100% identity) | GWCAY | HpyJ99bORF7250P |
| 7260 | 95 aa hypothetical protein | |||
| Chromosome | ||||
| 3745 | copper response regulator transcription factor | |||
| 3750 | M | M.HpyS300ORF2305P (100% identity) | M.HpyJ99aORF3750P | |
| 3755 | R | HpyS300ORF2305P (100% identity) | HpyJ99aORF3750P | |
| 3760 | rod shape-determining protein MreC | |||
| 3810 | DNA/RNA non-specific endonuclease | |||
| 3815 | M | M.HpyU428ORF7410P (100% identity) | M.HpyJ99aORF3815P | |
| 3820 | R | HpyS300ORF2380P (98% identity) | HpyJ99aORF3815P | |
| 3825 | biotin synthase | |||
| 4410 | 95 aa hypothetical protein | |||
| 4415 | R | HpyJ99bORF7250P (100% identity) | GWCAY | HpyJ99aORF4420P |
| 4420 | M | M.HpyS300ORF2995P (100% identity) | GWCAY | M.HpyJ99aORF4420P |
| 4425 | ATP-dependent DNA helicase RecG | |||