Escherichia coli XD35 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli XD35 RM systems
Ref: Peng,Z. unpublished
REBASE ref # 27685
| Sequence length: | GenBank #: | |
| Chromosome: | 4,834,621 bp | CP089142 |
| plasmid pXD35001: | 244,138 bp | CP089134 |
| plasmid pXD35002: | 129,210 bp | CP089135 |
| plasmid pXD35003: | 91,079 bp | CP089136 |
| plasmid pXD35004: | 85,891 bp | CP089137 |
REBASE acronym: EcoXD35
Org_num: 53946
All begin LS330_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6925 | IS3 family transposase | |||
| 6930 | M | M.EcoSJC33ORF24265P (100% identity) | M.EcoXD35ORF6930P | |
| 6935 | S | S.EcoLR72ORF18740P (66% identity) | S.EcoXD35ORF6930P | |
| 6940 | DUF4268 domain-containing protein | |||
| 6945 | R | SflSTLE3ORF22785P (100% identity) | EcoXD35ORF6930P | |
| 6950 | transposase | |||
| 12950 | 410 aa hypothetical protein | |||
| 12955 | M | M.Eco8571ORF18950P (100% identity) | TCAGNNNNNGGT | M.EcoXD35ORF12955P |
| 12960 | S | S.EcoSHP24ORF10835P (100% identity) | TCAGNNNNNGGT | S.EcoXD35ORF12955P |
| 12965 | YecA family protein | |||
| 12970 | cold shock domain-containing protein | |||
| 12975 | R | EcoSHP24ORF10835P (100% identity) | TCAGNNNNNGGT | EcoXD35ORF12955P |
| 12980 | M48 family metallopeptidase | |||
| 18210 | GTPase family protein | |||
| 18215 | M | M.EcoVEF10ORF27890P (100% identity) | M.EcoXD35ORF18215P | |
| 18220 | S | S.Efe42C24ORF17940P (99% identity) | S.EcoXD35ORF18215P | |
| 18225 | R | Eco19035ORF3645P (99% identity) | EcoXD35ORF18215P | |
| 18230 | IS5 family transposase | |||
| plasmid pXD35003 | ||||
| 2375 | type II toxin-antitoxin system Phd/YefM family | |||
| 2380 | M | M.Eco87310ORF25265P (100% identity) | M.EcoXD35ORF2380P | |
| 2385 | S | S.Efe41C20ORF17415P (26% identity) | S1.EcoXD35ORF2380P | |
| 2390 | IS5-like element ISEc68 family transposase | |||
| 2395 | S | S.Eco21CCORF46980P (63% identity) | S2.EcoXD35ORF2380P | |
| 2400 | R | EcoLR51ORF44750P (99% identity) | EcoXD35ORF2380P | |
| 2405 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5170 | cell division protein DamX | |||
| 5175 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoXD35DamP |
| 5180 | ribulose-phosphate 3-epimerase | |||
| 5800 | DUF2556 family protein | |||
| 5805 | M | M.EcoW409ORFAP (100% identity) | ATGCAT | M.EcoXD35ORF5805P |
| 5810 | DNA-binding transcriptional regulator Fis | |||
| 9175 | PerC family transcriptional regulator | |||
| 9180 | M | M.SdyFF10ORF21495P (100% identity) | GATC | M.EcoXD35ORF9180P |
| 9185 | LexA family transcriptional regulator | |||
| 9220 | TrmB family transcriptional regulator | |||
| 9225 | M | M.EcoY18JORF19500P (100% identity) | M.EcoXD35ORF9225P | |
| 9230 | phage lysis protein EssD | |||
| 12685 | phosphohydrolase | |||
| 12690 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoXD35DcmP |
| 12695 | V | V.SsoST152DcmP (100% identity) | CCWGG | V.EcoXD35DcmP |
| 12700 | drug/metabolite exporter YedA | |||
| 23440 | phage holin, lambda family | |||
| 23445 | M | M.EcoP80ORF17815P (100% identity) | M.EcoXD35ORF23445P | |
| 23450 | 67 aa hypothetical protein | |||
| 23480 | LexA family transcriptional regulator | |||
| 23485 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoXD35ORF23485P |
| 23490 | PerC family transcriptional regulator | |||
| plasmid pXD35001 | ||||
| 1150 | 48 aa hypothetical protein | |||
| 1155 | M | M.YpsF1ORFBP (100% identity) | M.EcoXD35ORF1155P | |
| 1160 | 202 aa hypothetical protein | |||
| 1270 | DNA-binding protein | |||
| 1275 | M | M.YpsF1ORFDP (95% identity) | M.EcoXD35ORF1275P | |
| 1280 | 284 aa hypothetical protein | |||
| plasmid pXD35002 | ||||
| 1915 | 73 aa hypothetical protein | |||
| 1920 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoXD35ORF1920P |
| 1925 | 103 aa hypothetical protein | |||
| plasmid pXD35004 | ||||
| 2745 | 97 aa hypothetical protein | |||
| 2750 | M | M.Xca80ORFEP (100% identity) | M.EcoXD35ORF2750P | |
| 2755 | 73 aa hypothetical protein | |||