Escherichia coli O157:H7 6535WT |
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Putative Escherichia coli O157:H7 6535WT RM systems
Ref: Kalalah,A. and Eppinger,M. unpublished
REBASE ref # 33364
Complete sequence: 5,649,272 bp
GenBank #: CP089032
REBASE acronym: Eco6535
Org_num: 53846
All begin LSI69_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 25340 | DUF262 domain-containing HNH endonuclease family | |||
| 25345 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco6535ORF25350P |
| 25350 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco6535ORF25350P |
| 25355 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco6535ORF25350P |
| 25360 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2395 | cell division protein DamX | |||
| 2400 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco6535DamP |
| 2405 | ribulose-phosphate 3-epimerase | |||
| 2910 | DUF2556 family protein | |||
| 2915 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco6535ORF2915P |
| 2920 | DNA-binding transcriptional regulator Fis | |||
| 7600 | DUF1382 family protein | |||
| 7605 | M | M.Sso1099ORF735P (100% identity) | GATC | M.Eco6535ORF7605P |
| 7610 | regulator | |||
| 7720 | Rha family transcriptional regulator | |||
| 7725 | R | Sso1099IP (100% identity) | CTGCAG | Eco6535ORF7730P |
| 7730 | M | M.EcoSH3ORF25410P (100% identity) | CTGCAG | M.Eco6535ORF7730P |
| 7735 | LexA family transcriptional regulator | |||
| 9365 | recombination protein NinB | |||
| 9370 | M | M.Eph2851ORFAP (100% identity) | GATC | M.Eco6535ORF9370P |
| 9375 | NinE family protein | |||
| 10740 | phosphohydrolase | |||
| 10745 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco6535DcmP |
| 10750 | V | V.EcosPA8DcmP (100% identity) | CCWGG | V.Eco6535DcmP |
| 10755 | drug/metabolite exporter YedA | |||
| 14535 | DUF1367 family protein | |||
| 14540 | R | Ecos15739ORF2910P (100% identity) | Eco6535ORF14550P | |
| 14545 | 329 aa hypothetical protein | |||
| 14550 | M | M.Ecos15739ORF2910P (100% identity) | M.Eco6535ORF14550P | |
| 14555 | 35 aa hypothetical protein | |||
| 15355 | DUF1737 domain-containing protein | |||
| 15360 | M | M.EcoNa1RORF15230P (100% identity) | M.Eco6535ORF15360P | |
| 15365 | TrmB family transcriptional regulator | |||
| 15730 | DUF1737 domain-containing protein | |||
| 15745 | M | M.EcosPA8ORF27255P (100% identity) | M.Eco6535ORF15745P | |
| 15750 | TrmB family transcriptional regulator | |||
| 18640 | phage antirepressor Ant | |||
| ??? | M | M.EcoX21ORFCP (100% identity) | GATC | M.Eco6535ORF18645P |
| 18655 | recombination protein NinB | |||
| 25575 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco6535ORF25575P |
| 25580 | DEAD/DEAH box helicase | |||
| 25610 | N-acetylneuraminic acid mutarotase | |||
| 25615 | R | Ecos1613ORF26795P (100% identity) | Eco6535ORF25615P | |
| 25620 | transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 25360 | endoribonuclease SymE | |||
| 25365 | R | EcosPA8GmrSDP (55% identity) | Eco6535GmrDP | |
| 25370 | R | Ecos1613GmrSP (100% identity) | Eco6535GmrSP | |
| 25375 | cytoplasmic protein | |||