Escherichia coli O157:H7 6535NalR |
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Putative Escherichia coli O157:H7 6535NalR RM systems
Ref: Kalalah,A. and Eppinger,M. unpublished
REBASE ref # 33364
| Sequence length: | GenBank #: | |
| Chromosome: | 5,644,599 bp | CP089034 |
| plasmid pO157: | 92,432 bp | CP089035 |
REBASE acronym: EcoNa1R
Org_num: 53845
All begin LSI70_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 25345 | DUF262 domain-containing HNH endonuclease family | |||
| 25350 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | EcoNa1RORF25355P |
| 25355 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.EcoNa1RORF25355P |
| 25360 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.EcoNa1RORF25355P |
| 25365 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2910 | DUF2556 family protein | |||
| 2915 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.EcoNa1RORF2915P |
| 2920 | DNA-binding transcriptional regulator Fis | |||
| 7595 | DUF1382 family protein | |||
| 7600 | M | M.Sso1099ORF735P (100% identity) | GATC | M.EcoNa1RORF7600P |
| 7605 | regulator | |||
| 7715 | Rha family transcriptional regulator | |||
| 7720 | R | Sso1099IP (100% identity) | CTGCAG | EcoNa1RORF7725P |
| 7725 | M | M.EcoSH3ORF25410P (100% identity) | CTGCAG | M.EcoNa1RORF7725P |
| 7730 | LexA family transcriptional regulator | |||
| 9235 | recombination protein NinB | |||
| 9240 | M | M.Eph2851ORFAP (100% identity) | GATC | M.EcoNa1RORF9240P |
| 9245 | NinE family protein | |||
| 10610 | phosphohydrolase | |||
| 10615 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoNa1RDcmP |
| 10620 | V | V.EcosPA8DcmP (100% identity) | CCWGG | V.EcoNa1RDcmP |
| 10625 | drug/metabolite exporter YedA | |||
| 14405 | DUF1367 family protein | |||
| 14410 | R | Ecos15739ORF2910P (100% identity) | EcoNa1RORF14420P | |
| 14415 | 329 aa hypothetical protein | |||
| 14420 | M | M.Ecos15739ORF2910P (100% identity) | M.EcoNa1RORF14420P | |
| 14425 | 35 aa hypothetical protein | |||
| 15225 | DUF1737 domain-containing protein | |||
| 15230 | M | M.Eco706002ORF15230P (100% identity) | M.EcoNa1RORF15230P | |
| 15235 | TrmB family transcriptional regulator | |||
| 15600 | DUF1737 domain-containing protein | |||
| 15615 | M | M.EcosPA8ORF27255P (100% identity) | M.EcoNa1RORF15615P | |
| 15620 | TrmB family transcriptional regulator | |||
| 18645 | phage antirepressor Ant | |||
| ??? | M | M.EcoX21ORFCP (100% identity) | GATC | M.EcoNa1RORF18650P |
| 18660 | recombination protein NinB | |||
| 25580 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoNa1RORF25580P |
| 25585 | DEAD/DEAH box helicase | |||
| 25615 | N-acetylneuraminic acid mutarotase | |||
| 25620 | R | Ecos1613ORF26795P (100% identity) | EcoNa1RORF25620P | |
| 25625 | transposase | |||
| plasmid pO157 | ||||
| 28705 | 101 aa hypothetical protein | |||
| 28710 | M | M.Ecos15739ORF28335P (99% identity) | M.EcoNa1RORF28710P | |
| 28715 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 25365 | endoribonuclease SymE | |||
| 25370 | R | EcosPA8GmrSDP (55% identity) | EcoNa1RGmrDP | |
| 25375 | R | Ecos1613GmrSP (100% identity) | EcoNa1RGmrSP | |
| 25380 | cytoplasmic protein | |||