Escherichia coli A16EC0054 |
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Putative Escherichia coli A16EC0054 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,159,453 bp | CP088869 |
| plasmid pA16EC0054-1: | 88,005 bp | CP088870 |
REBASE acronym: EcoC0054
Org_num: 53581
All begin LQQ67_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3305 | 97 aa hypothetical protein | |||
| 3310 | R | EcoSCU306ORF19130P (100% identity) | EcoC0054ORF3310P | |
| 3315 | response regulator receiver domain | |||
| 3580 | IS3 family transposase | |||
| 3585 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoC0054ORF3585P |
| 3590 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC0054ORF3585P |
| 3595 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoC0054ORF3585P |
| 3600 | McrC family protein | |||
| 10935 | TrmB family transcriptional regulator | |||
| 10940 | M | M.SboBSORF1444P (100% identity) | A | M.EcoC0054ORF10940P |
| 10960 | 39 aa hypothetical protein | |||
| 14810 | drug/metabolite exporter YedA | |||
| 14815 | V | V.EcosC25DcmP (99% identity) | V.EcoC0054DcmP | |
| 14820 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoC0054DcmP |
| 14825 | phosphohydrolase | |||
| 19015 | LexA family transcriptional regulator | |||
| 19020 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.EcoC0054ORF19020P |
| 19025 | PerC family transcriptional regulator | |||
| 22645 | DNA-binding transcriptional regulator Fis | |||
| 22650 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC0054ORF22650P |
| 22655 | DUF2556 family protein | |||
| 23245 | ribulose-phosphate 3-epimerase | |||
| 23250 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC0054DamP |
| 23255 | cell division protein DamX | |||
| plasmid pA16EC0054-1 | ||||
| 25460 | 103 aa hypothetical protein | |||
| 25465 | M | M.SspPIBORF23080P (100% identity) | M.EcoC0054ORF25465P | |
| 25470 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3595 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 3600 | R | EcosS9McrCP (100% identity) | EcoC0054McrCP | |
| 3605 | R | EcosS3McrBP (100% identity) | EcoC0054McrBP | |
| 3610 | glycosyltransferase | |||
| 18810 | DinI-like family protein | |||
| 18815 | R | EspFAAGmrSDP (100% identity) | EcoC0054GmrSDP | |
| 18820 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10055 | recombination protein NinB | |||
| 10060 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoC0054ORF10060P |
| 10065 | NinE family protein | |||