Escherichia coli B16EC1060 |
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Putative Escherichia coli B16EC1060 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,115,002 bp | CP088729 |
| plasmid pB16EC1060-1: | 122,954 bp | CP088730 |
| plasmid pB16EC1060-3: | 90,665 bp | CP088732 |
REBASE acronym: EcoC1060
Org_num: 53624
All begin LQT81_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20260 | endoribonuclease SymE | |||
| 20265 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoC1060ORF20275P |
| 20270 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoC1060ORF20275P |
| 20275 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoC1060ORF20275P |
| 20280 | restriction endonuclease | |||
| 22090 | ash family protein | |||
| 22095 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC1060ORF22100P |
| 22100 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC1060ORF22100P |
| 22105 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC1060ORF22100P |
| 22110 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid pB16EC1060-1 | ||||
| 25450 | IS1-like element IS1A family transposase | |||
| 25455 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNNCTGG | EcoC1060ORF25465P |
| 25460 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.EcoC1060ORF25465P |
| 25465 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.EcoC1060ORF25465P |
| 25470 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2570 | TrmB family transcriptional regulator | |||
| 2575 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoC1060ORF2575P |
| 2590 | DUF3927 family protein | |||
| 6120 | drug/metabolite exporter YedA | |||
| 6125 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC1060DcmP |
| 6130 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoC1060DcmP |
| 6135 | phosphohydrolase | |||
| 8395 | Com family DNA-binding transcriptional | |||
| 8400 | M | M.EcoS0756ORF16940P (100% identity) | M.EcoC1060ORF8400P | |
| 8405 | flagella biosynthesis regulator Flk | |||
| 9450 | PerC family transcriptional regulator | |||
| 9455 | M | M.EcoS44ORF14965P (100% identity) | M.EcoC1060ORF9455P | |
| 9460 | antA/AntB antirepressor family protein | |||
| 13895 | DNA-binding transcriptional regulator Fis | |||
| 13900 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC1060ORF13900P |
| 13905 | DUF2556 family protein | |||
| 14495 | ribulose-phosphate 3-epimerase | |||
| 14500 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC1060DamP |
| 14505 | cell division protein DamX | |||
| 19910 | helix-turn-helix domain-containing protein | |||
| 19915 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoC1060ORF19915P |
| 19920 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC1060ORF19915P |
| 19925 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoC1060ORF19915P |
| 19930 | McrC family protein | |||
| plasmid pB16EC1060-1 | ||||
| 25970 | 73 aa hypothetical protein | |||
| 25975 | M | M.Sso8ORF23800P (100% identity) | SAY | M.EcoC1060ORF25975P |
| 25980 | 103 aa hypothetical protein | |||
| plasmid pB16EC1060-3 | ||||
| 26675 | 73 aa hypothetical protein | |||
| 26680 | M | M.SspPIBORF23080P (100% identity) | M.EcoC1060ORF26680P | |
| 26685 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19925 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 19930 | R | EcosS9McrCP (100% identity) | EcoC1060McrCP | |
| 19935 | R | EcosS3McrBP (100% identity) | EcoC1060McrBP | |
| 19940 | glycosyltransferase | |||