Escherichia coli B16EC0875 |
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Putative Escherichia coli B16EC0875 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 4,987,105 bp | CP088764 |
| plasmid pB16EC0875-1: | 116,090 bp | CP088765 |
REBASE acronym: EcoC0875
Org_num: 53617
All begin LQR09_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18710 | type IV toxin-antitoxin system AbiEi family | |||
| 18715 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC0875ORF18720P |
| 18720 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC0875ORF18720P |
| 18725 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC0875ORF18720P |
| 18730 | ash family protein | |||
| 20530 | restriction endonuclease | |||
| 20535 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoC0875ORF20535P |
| 20540 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoC0875ORF20535P |
| 20545 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoC0875ORF20535P |
| 20550 | endoribonuclease SymE | |||
| plasmid pB16EC0875-1 | ||||
| 24360 | IS1-like element IS1A family transposase | |||
| 24365 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | EcoC0875ORF24375P |
| 24370 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.EcoC0875ORF24375P |
| 24375 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.EcoC0875ORF24375P |
| 24380 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1905 | cell division protein DamX | |||
| 1910 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC0875DamP |
| 1915 | ribulose-phosphate 3-epimerase | |||
| 2515 | DUF2556 family protein | |||
| 2520 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC0875ORF2520P |
| 2525 | DNA-binding transcriptional regulator Fis | |||
| 9660 | phosphohydrolase | |||
| 9665 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoC0875DcmP |
| 9670 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC0875DcmP |
| 9675 | drug/metabolite exporter YedA | |||
| 13210 | DUF3927 family protein | |||
| 13225 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoC0875ORF13225P |
| 13230 | TrmB family transcriptional regulator | |||
| 15470 | helix-turn-helix domain-containing protein | |||
| 15475 | M | M.KpnYN1ORFGP (89% identity) | M.EcoC0875ORF15475P | |
| 15480 | 71 aa hypothetical protein | |||
| 20880 | McrC family protein | |||
| 20885 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoC0875ORF20890P |
| 20890 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoC0875ORF20890P |
| 20895 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC0875ORF20890P |
| 20900 | helix-turn-helix domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20870 | glycosyltransferase | |||
| 20875 | R | EcosS3McrBP (100% identity) | EcoC0875McrBP | |
| 20880 | R | EcosS9McrCP (100% identity) | EcoC0875McrCP | |
| 20885 | Alw26I/Eco31I/Esp3I family type II restriction | |||