Escherichia coli C16EC0033 |
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Putative Escherichia coli C16EC0033 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 4,958,331 bp | CP088687 |
| plasmid pC16EC0033-1: | 121,384 bp | CP088688 |
REBASE acronym: EcoC0033
Org_num: 53641
All begin LQR02_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18575 | type IV toxin-antitoxin system AbiEi family | |||
| 18580 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC0033ORF18585P |
| 18585 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC0033ORF18585P |
| 18590 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC0033ORF18585P |
| 18595 | ash family protein | |||
| 20395 | restriction endonuclease | |||
| 20400 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.EcoC0033ORF20400P |
| 20405 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.EcoC0033ORF20400P |
| 20410 | R | EcosS9ORF3165P (99% identity) | RTACNNNNGTG | EcoC0033ORF20400P |
| 20415 | endoribonuclease SymE | |||
| 22215 | transposase | |||
| 22220 | R | EcotcmA3ORF16550P (100% identity) | EcoC0033ORF22240P | |
| 22225 | DNA-protecting protein DprA | |||
| 22230 | RecQ family ATP-dependent DNA helicase | |||
| 22235 | S | S.EcotcmA3ORF16550P (100% identity) | S.EcoC0033ORF22240P | |
| 22240 | M | M.Pre393ORF2750P (100% identity) | M.EcoC0033ORF22240P | |
| 22245 | helix-turn-helix domain-containing protein | |||
| plasmid pC16EC0033-1 | ||||
| 24195 | IS1-like element IS1A family transposase | |||
| 24200 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNNCTGG | EcoC0033ORF24210P |
| 24205 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.EcoC0033ORF24210P |
| 24210 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.EcoC0033ORF24210P |
| 24215 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2525 | DUF2556 family protein | |||
| 2530 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC0033ORF2530P |
| 2535 | DNA-binding transcriptional regulator Fis | |||
| 9555 | phosphohydrolase | |||
| 9560 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoC0033DcmP |
| 9565 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC0033DcmP |
| 9570 | drug/metabolite exporter YedA | |||
| 13055 | DUF3927 family protein | |||
| 13070 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoC0033ORF13070P |
| 13075 | TrmB family transcriptional regulator | |||
| 15330 | helix-turn-helix domain-containing protein | |||
| 15335 | M | M.KpnYN1ORFGP (89% identity) | M.EcoC0033ORF15335P | |
| 15340 | 71 aa hypothetical protein | |||
| 20660 | McrC family protein | |||
| 20665 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoC0033ORF20670P |
| 20670 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoC0033ORF20670P |
| 20675 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC0033ORF20670P |
| 20680 | helix-turn-helix domain-containing protein | |||
| plasmid pC16EC0033-1 | ||||
| 24135 | 73 aa hypothetical protein | |||
| 24140 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoC0033ORF24140P |
| 24145 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20650 | glycosyltransferase | |||
| 20655 | R | EcosS3McrBP (100% identity) | EcoC0033McrBP | |
| 20660 | R | EcosS9McrCP (100% identity) | EcoC0033McrCP | |
| 20665 | Alw26I/Eco31I/Esp3I family type II restriction | |||