Escherichia coli B16EC1174 |
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Putative Escherichia coli B16EC1174 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 4,664,085 bp | CP088719 |
| plasmid pB16EC1174-1: | 134,860 bp | CP088716 |
REBASE acronym: EcoC1174
Org_num: 53628
All begin LQR06_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17755 | type IV toxin-antitoxin system AbiEi family | |||
| 17760 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC1174ORF17765P |
| 17765 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC1174ORF17765P |
| 17770 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC1174ORF17765P |
| 17775 | ash family protein | |||
| 19580 | restriction endonuclease | |||
| 19585 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.EcoC1174ORF19585P |
| 19590 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.EcoC1174ORF19585P |
| 19595 | R | EcosS9ORF3165P (100% identity) | RTACNNNNGTG | EcoC1174ORF19585P |
| 19600 | endoribonuclease SymE | |||
| 21495 | IS3-like element ISSen4 family transposase | |||
| 21500 | R | EcotcmA3ORF16550P (100% identity) | EcoC1174ORF21520P | |
| 21505 | DNA-protecting protein DprA | |||
| 21510 | RecQ family ATP-dependent DNA helicase | |||
| 21515 | S | S.EcotcmA3ORF16550P (100% identity) | S.EcoC1174ORF21520P | |
| 21520 | M | M.Pre393ORF2750P (100% identity) | M.EcoC1174ORF21520P | |
| 21525 | helix-turn-helix domain-containing protein | |||
| plasmid pB16EC1174-1 | ||||
| 255 | IS1-like element IS1A family transposase | |||
| 260 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNNCTGG | EcoC1174ORF270P |
| 265 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.EcoC1174ORF270P |
| 270 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.EcoC1174ORF270P |
| 275 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2745 | cell division protein DamX | |||
| 2750 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC1174DamP |
| 2755 | ribulose-phosphate 3-epimerase | |||
| 3355 | DUF2556 family protein | |||
| 3360 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC1174ORF3360P |
| 3365 | DNA-binding transcriptional regulator Fis | |||
| 10500 | phosphohydrolase | |||
| 10505 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoC1174DcmP |
| 10510 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC1174DcmP |
| 10515 | drug/metabolite exporter YedA | |||
| 14050 | DUF3927 family protein | |||
| 14065 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoC1174ORF14065P |
| 14070 | TrmB family transcriptional regulator | |||
| 19960 | McrC family protein | |||
| 19965 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoC1174ORF19970P |
| 19970 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoC1174ORF19970P |
| 19975 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC1174ORF19970P |
| 19980 | helix-turn-helix domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19950 | IS66-like element ISEc23 family transposase | |||
| 19955 | R | EcosS3McrBP (100% identity) | EcoC1174McrBP | |
| 19960 | R | EcosS9McrCP (100% identity) | EcoC1174McrCP | |
| 19965 | Alw26I/Eco31I/Esp3I family type II restriction | |||