Escherichia coli C16EC0513 |
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Putative Escherichia coli C16EC0513 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 4,846,825 bp | CP088660 |
| plasmid pC16EC0513-1: | 188,318 bp | CP088661 |
REBASE acronym: EcoC0513
Org_num: 53649
All begin LQT19_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3375 | type IV toxin-antitoxin system AbiEi family | |||
| 3380 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC0513ORF3385P |
| 3385 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC0513ORF3385P |
| 3390 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC0513ORF3385P |
| 3395 | ash family protein | |||
| 5450 | restriction endonuclease | |||
| 5455 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoC0513ORF5455P |
| 5460 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoC0513ORF5455P |
| 5465 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoC0513ORF5455P |
| 5470 | endoribonuclease SymE | |||
| plasmid pC16EC0513-1 | ||||
| 24215 | IS1-like element IS1A family transposase | |||
| 24220 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | EcoC0513ORF24230P |
| 24225 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.EcoC0513ORF24230P |
| 24230 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.EcoC0513ORF24230P |
| 24235 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5200 | phage lysis protein EssD | |||
| 5205 | M | M.Sso63633ORF22290P (100% identity) | M.EcoC0513ORF5205P | |
| 5210 | TrmB family transcriptional regulator | |||
| 5210 | TrmB family transcriptional regulator | |||
| 5215 | R | EcoS0247ORF16915AP (100% identity) | GTCGAC | EcoC0513ORF5225AP |
| 5220 | R | EcoS0247ORF16915BP (100% identity) | GTCGAC | EcoC0513ORF5225BP |
| 5225 | M | M.EcoST131ORF16015P (100% identity) | GTCGAC | M.EcoC0513ORF5225P |
| 5230 | antitermination protein | |||
| 5800 | McrC family protein | |||
| 5805 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoC0513ORF5810P |
| 5810 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoC0513ORF5810P |
| 5815 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC0513ORF5810P |
| 5820 | helix-turn-helix domain-containing protein | |||
| 11000 | cell division protein DamX | |||
| 11005 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC0513DamP |
| 11010 | ribulose-phosphate 3-epimerase | |||
| 11600 | DUF2556 family protein | |||
| 11605 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC0513ORF11605P |
| 11610 | DNA-binding transcriptional regulator Fis | |||
| 18715 | phosphohydrolase | |||
| 18720 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoC0513DcmP |
| 18725 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC0513DcmP |
| 18730 | drug/metabolite exporter YedA | |||
| 22530 | DUF3927 family protein | |||
| 22545 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoC0513ORF22545P |
| 22550 | TrmB family transcriptional regulator | |||
| 23540 | phage holin family protein | |||
| 23545 | M | M.EfeEF02ORF219620P (100% identity) | M.EcoC0513ORF23545P | |
| 23550 | 75 aa hypothetical protein | |||
| plasmid pC16EC0513-1 | ||||
| 24865 | 73 aa hypothetical protein | |||
| 24870 | M | M.Sfl7ORF23565P (99% identity) | M.EcoC0513ORF24870P | |
| 24875 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5790 | glycosyltransferase | |||
| 5795 | R | EcosS3McrBP (100% identity) | EcoC0513McrBP | |
| 5800 | R | EcosS9McrCP (100% identity) | EcoC0513McrCP | |
| 5805 | Alw26I/Eco31I/Esp3I family type II restriction | |||