Escherichia coli D16EC0209 |
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Putative Escherichia coli D16EC0209 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
Complete sequence: 5,186,851 bp
GenBank #: CP088609
REBASE acronym: EcoC0209
Org_num: 53685
All begin LQR22_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 7905 | M48 family metallopeptidase | |||
| 7910 | R | Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | EcoC0209ORF7930P |
| 7915 | cold shock domain-containing protein | |||
| 7920 | YecA family protein | |||
| 7925 | S | S.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | S.EcoC0209ORF7930P |
| 7930 | M | M.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | M.EcoC0209ORF7930P |
| 7935 | IS3 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1970 | TraR/DksA family transcriptional regulator | |||
| 1975 | M | M.SspS13ORF8710P (100% identity) | GATC | M.EcoC0209ORF1975P |
| 1980 | replication endonuclease | |||
| 4390 | TrmB family transcriptional regulator | |||
| 4395 | M | M.SsoL4094ORF17545P (100% identity) | A | M.EcoC0209ORF4395P |
| 4410 | DUF3927 family protein | |||
| 8180 | drug/metabolite exporter YedA | |||
| 8185 | V | V.Ecos142DcmP (100% identity) | V.EcoC0209DcmP | |
| 8190 | M | M.Ecos142DcmP (100% identity) | CCWGG | M.EcoC0209DcmP |
| 8195 | phosphohydrolase | |||
| 11440 | PerC family transcriptional regulator | |||
| 11445 | M | M.SspPIBORF6330P (100% identity) | GATC | M.EcoC0209ORF11445P |
| 11450 | DUF1382 family protein | |||
| 15975 | DNA-binding transcriptional regulator Fis | |||
| 15980 | M | M.Ecos142ORF2405P (100% identity) | ATGCAT | M.EcoC0209ORF15980P |
| 15985 | DUF2556 family protein | |||
| 16505 | ribulose-phosphate 3-epimerase | |||
| 16510 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC0209DamP |
| 16515 | cell division protein DamX | |||
| 20460 | PerC family transcriptional regulator | |||
| 20465 | M | M.SdyFF10ORF21495P (100% identity) | GATC | M.EcoC0209ORF20465P |
| 20470 | LexA family transcriptional regulator | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21225 | 71 aa hypothetical protein | |||
| 21230 | R | KpnCRE49ORF27225P (100% identity) | CTSAG | EcoC0209ORF21235P |
| 21235 | M | M.KpnCRE49ORF27225P (100% identity) | CTSAG | M.EcoC0209ORF21235P |
| 21240 | 302 aa hypothetical protein | |||
| 22315 | SNF2-related protein | |||
| 22320 | M | M.SflN116ORF19490P (100% identity) | GAACC | M.EcoC0209ORF22320P |
| 22325 | R | SflN116ORF19490P (100% identity) | GAACC | EcoC0209ORF22320P |
| 22330 | 100 aa hypothetical protein | |||