Escherichia coli D16EC0387 |
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Putative Escherichia coli D16EC0387 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,031,172 bp | CP088607 |
| plasmid pD16EC0387-4: | 111,512 bp | CP088606 |
REBASE acronym: EcoC0387
Org_num: 53686
All begin LQT61_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7710 | endoribonuclease SymE | |||
| 7715 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoC0387ORF7725P |
| 7720 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoC0387ORF7725P |
| 7725 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoC0387ORF7725P |
| 7730 | restriction endonuclease | |||
| 9790 | ash family protein | |||
| 9795 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC0387ORF9800P |
| 9800 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC0387ORF9800P |
| 9805 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC0387ORF9800P |
| 9810 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid pD16EC0387-4 | ||||
| 1460 | type II toxin-antitoxin system Phd/YefM family | |||
| 1465 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.EcoC0387ORF1465P |
| 1470 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.EcoC0387ORF1465P |
| 1475 | R | KpnKPH1ORF27575P (87% identity) | CAAYNNNNNCTGG | EcoC0387ORF1465P |
| 1480 | IS1-like element IS1A family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2150 | ribulose-phosphate 3-epimerase | |||
| 2155 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC0387DamP |
| 2160 | cell division protein DamX | |||
| 7365 | helix-turn-helix domain-containing protein | |||
| 7370 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoC0387ORF7370P |
| 7375 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC0387ORF7370P |
| 7380 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoC0387ORF7370P |
| 7385 | McrC family protein | |||
| 7955 | antitermination protein | |||
| 7960 | M | M.EcoST131ORF16015P (100% identity) | GTCGAC | M.EcoC0387ORF7960P |
| 7965 | R | EcoS0247ORF16915BP (100% identity) | GTCGAC | R1.EcoC0387ORF7960P |
| 7970 | R | EcoS0247ORF16915AP (100% identity) | GTCGAC | R2.EcoC0387ORF7960P |
| 7975 | TrmB family transcriptional regulator | |||
| 7975 | TrmB family transcriptional regulator | |||
| 7980 | M | M.Sso63633ORF22290P (100% identity) | M.EcoC0387ORF7980P | |
| 7985 | phage lysis protein EssD | |||
| 13055 | 71 aa hypothetical protein | |||
| 13060 | M | M.KpnYN1ORFGP (89% identity) | M.EcoC0387ORF13060P | |
| 13065 | helix-turn-helix domain-containing protein | |||
| 15345 | TrmB family transcriptional regulator | |||
| 15350 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoC0387ORF15350P |
| 15365 | DUF3927 family protein | |||
| 18905 | drug/metabolite exporter YedA | |||
| 18910 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC0387DcmP |
| 18915 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoC0387DcmP |
| 18920 | phosphohydrolase | |||
| 26085 | DNA-binding transcriptional regulator Fis | |||
| 26090 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC0387ORF26090P |
| 26095 | DUF2556 family protein | |||
| plasmid pD16EC0387-4 | ||||
| 1530 | 101 aa hypothetical protein | |||
| 1535 | M | M.EcoEC488ORF26660P (96% identity) | M.EcoC0387ORF1535P | |
| 1540 | 74 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7380 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 7385 | R | EcosS9McrCP (100% identity) | EcoC0387McrCP | |
| 7390 | R | Ecos9McrBP (35% identity) | EcoC0387McrBP | |
| 7395 | IS3-like element ISEc52 family transposase | |||