Escherichia coli E17EC0423 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli E17EC0423 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,006,160 bp | CP088461 |
| plasmid pE17EC0423-1: | 146,740 bp | CP088462 |
REBASE acronym: EcoC0423
Org_num: 53749
All begin LQT92_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19900 | type IV toxin-antitoxin system AbiEi family | |||
| 19905 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC0423ORF19910P |
| 19910 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC0423ORF19910P |
| 19915 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC0423ORF19910P |
| 19920 | ash family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4010 | DUF2556 family protein | |||
| 4015 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC0423ORF4015P |
| 4020 | DNA-binding transcriptional regulator Fis | |||
| 11460 | phosphohydrolase | |||
| 11465 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoC0423DcmP |
| 11470 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC0423DcmP |
| 11475 | drug/metabolite exporter YedA | |||
| 15675 | DUF3927 family protein | |||
| 15690 | M | M.Ecos131ORF2315P (100% identity) | A | M.EcoC0423ORF15690P |
| 15695 | TrmB family transcriptional regulator | |||
| 21845 | McrC family protein | |||
| 21850 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoC0423ORF21855P |
| 21855 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoC0423ORF21855P |
| 21860 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC0423ORF21855P |
| 21865 | helix-turn-helix domain-containing protein | |||
| 22130 | 174 aa hypothetical protein | |||
| 22135 | M | M.Sen5773ORF4471P (100% identity) | RCCGGY | M.EcoC0423ORF22135P |
| 22140 | ATP-binding protein | |||
| 22145 | response regulator receiver domain | |||
| 22150 | R | Ecos19ORF20635P (100% identity) | EcoC0423ORF22150P | |
| 22155 | 97 aa hypothetical protein | |||
| 23125 | response regulator receiver domain | |||
| 23130 | R | EcosS3ORF15775P (100% identity) | EcoC0423ORF23135P | |
| 23135 | M | M.EcosS3ORF15775P (100% identity) | M.EcoC0423ORF23135P | |
| 23140 | conjugal transfer protein TraG N-terminal | |||
| plasmid pE17EC0423-1 | ||||
| 24380 | 103 aa hypothetical protein | |||
| 24385 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.EcoC0423ORF24385P |
| 24390 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11260 | shufflon system plasmid conjugative transfer | |||
| 11265 | R | Ecost88ORF24685P (100% identity) | EcoC0423ORF11270P | |
| 11270 | M | M.EcosS2ORF3675P (100% identity) | M.EcoC0423ORF11270P | |
| 11275 | SpnT protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21835 | glycosyltransferase | |||
| 21840 | R | EcosS3McrBP (100% identity) | EcoC0423McrBP | |
| 21845 | R | EcosS9McrCP (100% identity) | EcoC0423McrCP | |
| 21850 | Alw26I/Eco31I/Esp3I family type II restriction | |||