Escherichia coli F16EC0342 |
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Putative Escherichia coli F16EC0342 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,257,876 bp | CP088413 |
| plasmid pF16EC0342-1: | 116,238 bp | CP088411 |
| plasmid pF16EC0342-2: | 111,606 bp | CP088412 |
REBASE acronym: EcoEC0342
Org_num: 53780
All begin LQT13_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3440 | 184 aa hypothetical protein | |||
| 3445 | R | Ecos53ORF20340P (100% identity) | ACYNNNNNNGTTC | EcoEC0342ORF3455P |
| 3450 | S | S.Ecos53ORF20340P (100% identity) | ACYNNNNNNGTTC | S.EcoEC0342ORF3455P |
| 3455 | M | M.EcoEC0507ORF25295P (100% identity) | ACYNNNNNNGTTC | M.EcoEC0342ORF3455P |
| 3460 | type II toxin-antitoxin system RelB/DinJ family | |||
| 22645 | type IV toxin-antitoxin system AbiEi family | |||
| 22650 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoEC0342ORF22655P |
| 22655 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoEC0342ORF22655P |
| 22660 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoEC0342ORF22655P |
| 22665 | ash family protein | |||
| 24480 | restriction endonuclease | |||
| 24485 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoEC0342ORF24485P |
| 24490 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoEC0342ORF24485P |
| 24495 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoEC0342ORF24485P |
| 24500 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5555 | DUF2556 family protein | |||
| 5560 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoEC0342ORF5560P |
| 5565 | DNA-binding transcriptional regulator Fis | |||
| 13005 | phosphohydrolase | |||
| 13010 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoEC0342DcmP |
| 13015 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoEC0342DcmP |
| 13020 | drug/metabolite exporter YedA | |||
| 13885 | antitermination protein | |||
| 13890 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M.EcoEC0342ORF13890P |
| 13895 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcoEC0342ORF13890P |
| 13900 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcoEC0342ORF13890P |
| 13905 | TrmB family transcriptional regulator | |||
| 16880 | DUF3927 family protein | |||
| 16895 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoEC0342ORF16895P |
| 16900 | TrmB family transcriptional regulator | |||
| 19160 | helix-turn-helix domain-containing protein | |||
| 19165 | M | M.KpnYN1ORFGP (89% identity) | M.EcoEC0342ORF19165P | |
| 19170 | 71 aa hypothetical protein | |||
| 24825 | McrC family protein | |||
| 24830 | R | EcosS9ORF2810P (33% identity) | GGTCTC | EcoEC0342ORF24845AP |
| 24835 | IS3-like element ISEc52 family transposase | |||
| 24840 | R | R1.EcoS4ORF17760P (100% identity) | GGTCTC | EcoEC0342ORF24845BP |
| 24845 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoEC0342ORF24845P |
| 24850 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoEC0342ORF24845P |
| 24855 | helix-turn-helix domain-containing protein | |||
| 26155 | response regulator receiver domain | |||
| 26160 | R | EcosS3ORF15775P (100% identity) | EcoEC0342ORF26165P | |
| 26165 | M | M.EcosS3ORF15775P (100% identity) | M.EcoEC0342ORF26165P | |
| 26170 | conjugal transfer protein TraG N-terminal | |||
| plasmid pF16EC0342-1 | ||||
| 705 | 73 aa hypothetical protein | |||
| 710 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoEC0342ORF710P | |
| 715 | 103 aa hypothetical protein | |||
| plasmid pF16EC0342-2 | ||||
| 1360 | 73 aa hypothetical protein | |||
| 1365 | M | M.Sso80ORF24890P (100% identity) | M.EcoEC0342ORF1365P | |
| 1370 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24815 | glycosyltransferase | |||
| 24820 | R | EcosS3McrBP (100% identity) | EcoEC0342McrBP | |
| 24825 | R | EcosS9McrCP (100% identity) | EcoEC0342McrCP | |
| 24830 | 195 aa hypothetical protein | |||