Escherichia coli F16EC0455 |
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Putative Escherichia coli F16EC0455 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,255,579 bp | CP088406 |
| plasmid pF16EC0455-1: | 141,127 bp | CP088404 |
REBASE acronym: EcoEC0455
Org_num: 53783
All begin LQT89_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7960 | endoribonuclease SymE | |||
| 7965 | R | EcosS9ORF3165P (100% identity) | RTACNNNNGTG | EcoEC0455ORF7975P |
| 7970 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.EcoEC0455ORF7975P |
| 7975 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.EcoEC0455ORF7975P |
| 7980 | restriction endonuclease | |||
| 9790 | ash family protein | |||
| 9795 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoEC0455ORF9800P |
| 9800 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoEC0455ORF9800P |
| 9805 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoEC0455ORF9800P |
| 9810 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1845 | ribulose-phosphate 3-epimerase | |||
| 1850 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoEC0455DamP |
| 1855 | cell division protein DamX | |||
| 6270 | conjugal transfer protein TraG N-terminal | |||
| 6275 | M | M.EcosS3ORF15775P (100% identity) | M.EcoEC0455ORF6275P | |
| 6280 | R | EcosS3ORF15775P (100% identity) | EcoEC0455ORF6275P | |
| 6285 | response regulator receiver domain | |||
| 7605 | helix-turn-helix domain-containing protein | |||
| 7610 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoEC0455ORF7610P |
| 7615 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoEC0455ORF7610P |
| 7620 | R | R1.EcoS4ORF17760P (100% identity) | GGTCTC | EcoEC0455ORF7610BP |
| 7625 | IS3-like element ISEc52 family transposase | |||
| 7630 | R | EcosS9ORF2810P (33% identity) | GGTCTC | EcoEC0455ORF7610AP |
| 7635 | McrC family protein | |||
| 13285 | 71 aa hypothetical protein | |||
| 13290 | M | M.KpnYN1ORFGP (89% identity) | M.EcoEC0455ORF13290P | |
| 13295 | helix-turn-helix domain-containing protein | |||
| 15565 | TrmB family transcriptional regulator | |||
| 15570 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoEC0455ORF15570P |
| 15585 | DUF3927 family protein | |||
| 18560 | TrmB family transcriptional regulator | |||
| 18565 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcoEC0455ORF18575P |
| 18570 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcoEC0455ORF18575P |
| 18575 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M.EcoEC0455ORF18575P |
| 18580 | antitermination protein | |||
| 19445 | drug/metabolite exporter YedA | |||
| 19450 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoEC0455DcmP |
| 19455 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoEC0455DcmP |
| 19460 | phosphohydrolase | |||
| 23195 | 121 aa hypothetical protein | |||
| 23200 | R | Sso8033ORF3755P (100% identity) | CCWGG | EcoEC0455ORF23205P |
| 23205 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcoEC0455ORF23205P |
| 23210 | 257 aa hypothetical protein | |||
| 23335 | phage lysis protein EssD | |||
| 23340 | M | M.EcosR6ORF7985P (100% identity) | M.EcoEC0455ORF23340P | |
| 23345 | 95 aa hypothetical protein | |||
| 23380 | LexA family transcriptional regulator | |||
| 23385 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoEC0455ORF23385P |
| 23390 | PerC family transcriptional regulator | |||
| 27160 | DNA-binding transcriptional regulator Fis | |||
| 27165 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoEC0455ORF27165P |
| 27170 | DUF2556 family protein | |||
| plasmid pF16EC0455-1 | ||||
| 855 | 73 aa hypothetical protein | |||
| 860 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.EcoEC0455ORF860P |
| 865 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7630 | 195 aa hypothetical protein | |||
| 7635 | R | EcosS9McrCP (100% identity) | EcoEC0455McrCP | |
| 7640 | R | EcosS3McrBP (100% identity) | EcoEC0455McrBP | |
| 7645 | glycosyltransferase | |||