Escherichia coli 423917 |
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Putative Escherichia coli 423917 RM systems
Ref: Greig,D.R. et al. unpublished
REBASE ref # 33271
| Sequence length: | GenBank #: | |
| Chromosome: | 5,555,034 bp | CP088056 |
| plasmid p423917: | 93,689 bp | CP088057 |
REBASE acronym: Eco423917
Org_num: 53272
All begin E8R56_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3400 | endoribonuclease SymE | |||
| 3405 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco423917ORF3410P |
| 3410 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco423917ORF3410P |
| 3415 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco423917ORF3410P |
| 3420 | DUF262 domain-containing HNH endonuclease family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1890 | 65 aa hypothetical protein | |||
| 1895 | M | M.EcosPA8ORF16100P (100% identity) | M.Eco423917ORF1895P | |
| 1900 | Eae protein | |||
| 3125 | transposase | |||
| 3130 | R | Ecos1613ORF26795P (100% identity) | Eco423917ORF3130P | |
| 3135 | N-acetylneuraminic acid mutarotase | |||
| 3165 | DEAD/DEAH box helicase | |||
| 3170 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco423917ORF3170P |
| 11520 | epoxyqueuosine reductase QueH | |||
| 11525 | M | M.EcoZ910ORF13770P (100% identity) | GCCGGC | M1.Eco423917ORF11525P |
| 11530 | R | EcoZ910ORF13770P (100% identity) | GCCGGC | Eco423917ORF11525P |
| 11535 | 90 aa hypothetical protein | |||
| 11540 | DUF968 domain-containing protein | |||
| 11545 | RusA family crossover junction | |||
| 11550 | antitermination protein | |||
| 11555 | TrmB family transcriptional regulator | |||
| 11560 | M | M.EcoZ910ORF13805P (100% identity) | M2.Eco423917ORF11525P | |
| 11565 | DUF1737 domain-containing protein | |||
| 13255 | DUF1737 domain-containing protein | |||
| 13270 | M | M.EcosPA8ORF27255P (100% identity) | M.Eco423917ORF13270P | |
| 13275 | TrmB family transcriptional regulator | |||
| 15790 | drug/metabolite exporter YedA | |||
| 15795 | V | V.EcosPA8DcmP (100% identity) | CCWGG | V.Eco423917DcmP |
| 15800 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco423917DcmP |
| 15805 | phosphohydrolase | |||
| 20365 | NinE family protein | |||
| 20370 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco423917ORF20370P |
| 20375 | recombination protein NinB | |||
| 25275 | DNA-binding transcriptional regulator Fis | |||
| 25280 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco423917ORF25280P |
| 25285 | DUF2556 family protein | |||
| 25790 | ribulose-phosphate 3-epimerase | |||
| 25795 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco423917DamP |
| 25800 | cell division protein DamX | |||
| plasmid p423917 | ||||
| 27905 | 101 aa hypothetical protein | |||
| 27910 | M | M.EcosPA8ORF27775P (100% identity) | M.Eco423917ORF27910P | |
| 27915 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3385 | DUF1127 domain-containing protein | |||
| 3390 | R | Ecos1613GmrSP (100% identity) | Eco423917GmrSP | |
| 3395 | R | EcosPA8GmrSDP (55% identity) | Eco423917GmrDP | |
| 3400 | endoribonuclease SymE | |||